miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 61066 0.67 0.756961
Target:  5'- aGCGCAGGggcccgUGGG-CgCUGCUgaAGCGCCUc -3'
miRNA:   3'- -CGCGUCC------AUCCaG-GGCGAg-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 62748 0.73 0.402186
Target:  5'- cCGCAGG-GGGUggUCCGCggcgaggcacggCAGCGCCCg -3'
miRNA:   3'- cGCGUCCaUCCA--GGGCGa-----------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 64844 0.7 0.579836
Target:  5'- -aGCAGGcugGGGUCgCGCgcgcCGGCgcGCCCa -3'
miRNA:   3'- cgCGUCCa--UCCAGgGCGa---GUCG--UGGG- -5'
31005 3' -59.1 NC_006560.1 + 65324 0.68 0.649672
Target:  5'- gGCGaaucaGGGUGGGggCCgGCUCgccGGC-CCCa -3'
miRNA:   3'- -CGCg----UCCAUCCa-GGgCGAG---UCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 67284 0.76 0.278075
Target:  5'- gGCcCGGGUGGGUCgCCGCUC--CACCCc -3'
miRNA:   3'- -CGcGUCCAUCCAG-GGCGAGucGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 70925 0.66 0.784489
Target:  5'- gGCGCcuGGGgggacuacagccUGGGg-CCGCUCGGCACgaCCa -3'
miRNA:   3'- -CGCG--UCC------------AUCCagGGCGAGUCGUG--GG- -5'
31005 3' -59.1 NC_006560.1 + 71049 0.68 0.669616
Target:  5'- uGCuGCAGGUgacggacggGGuGUUCCGCgccUCGGCGCuCCg -3'
miRNA:   3'- -CG-CGUCCA---------UC-CAGGGCG---AGUCGUG-GG- -5'
31005 3' -59.1 NC_006560.1 + 73179 0.7 0.530879
Target:  5'- gGCGCGGGggcggAGGgCCCGgcCUCGGC-CCUc -3'
miRNA:   3'- -CGCGUCCa----UCCaGGGC--GAGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 73987 0.71 0.521258
Target:  5'- gGCGCGGGcccGGGUcCCCGCcCcGCcCCCg -3'
miRNA:   3'- -CGCGUCCa--UCCA-GGGCGaGuCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 75702 0.66 0.802202
Target:  5'- cCGCcuGGacUGGGggCCCGCguUCGGCGCCg -3'
miRNA:   3'- cGCGu-CC--AUCCa-GGGCG--AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 76514 0.66 0.805676
Target:  5'- cGCGCGGcgcGUcuucGGGgcgcaCCCGCUgaccgccgcgcgcgaCGGCGCCCc -3'
miRNA:   3'- -CGCGUC---CA----UCCa----GGGCGA---------------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 77117 0.7 0.550307
Target:  5'- gGCGCGGGcGGGcCgCCGC-CGcccGCGCCCc -3'
miRNA:   3'- -CGCGUCCaUCCaG-GGCGaGU---CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 77682 0.7 0.540564
Target:  5'- cGCGCGGaG-AGGgcgcgcucgcCCCGCUCgcggagccggcgGGCGCCCg -3'
miRNA:   3'- -CGCGUC-CaUCCa---------GGGCGAG------------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 78114 0.65 0.809985
Target:  5'- gGCGCuGGUGgcGGUCagcgUGCUCGGCcgcauguGCCUg -3'
miRNA:   3'- -CGCGuCCAU--CCAGg---GCGAGUCG-------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 78895 0.72 0.420847
Target:  5'- uGCGCgAGGcguucccgGGGgcgCCCGCguacCGGCGCCCc -3'
miRNA:   3'- -CGCG-UCCa-------UCCa--GGGCGa---GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 79654 0.67 0.709089
Target:  5'- cCGCAacguccGGcgcccCCCGCUCGGCGCCCc -3'
miRNA:   3'- cGCGU------CCauccaGGGCGAGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 79848 0.66 0.802202
Target:  5'- gGCGCGGaccgagccGGGccgccCCCGCccccgccacgccUCGGCACCCg -3'
miRNA:   3'- -CGCGUCca------UCCa----GGGCG------------AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 80161 0.68 0.679548
Target:  5'- gGgGCGGGUcgAGGUCCCccggcggguCUCGucccccGCACCCu -3'
miRNA:   3'- -CgCGUCCA--UCCAGGGc--------GAGU------CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 81069 0.66 0.802202
Target:  5'- uCGUGGGUGuGGUCCaCGggCuGCGCCUc -3'
miRNA:   3'- cGCGUCCAU-CCAGG-GCgaGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 81194 0.68 0.699293
Target:  5'- gGCGCGGGUGGGgg-CGCgaCGGCgACCg -3'
miRNA:   3'- -CGCGUCCAUCCaggGCGa-GUCG-UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.