miRNA display CGI


Results 101 - 120 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 81375 0.67 0.728484
Target:  5'- aGCGCGGGcggaacGG-CCCGCU--GCugCCg -3'
miRNA:   3'- -CGCGUCCau----CCaGGGCGAguCGugGG- -5'
31005 3' -59.1 NC_006560.1 + 81852 0.67 0.718822
Target:  5'- cGCGCAGGUacGGGUugcaggggacgUCCGCcCAGuCGCgCa -3'
miRNA:   3'- -CGCGUCCA--UCCA-----------GGGCGaGUC-GUGgG- -5'
31005 3' -59.1 NC_006560.1 + 81981 0.74 0.340428
Target:  5'- uGgGCAGGUAGGgcCCCGCcUC-GCACUCc -3'
miRNA:   3'- -CgCGUCCAUCCa-GGGCG-AGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 83508 0.67 0.709089
Target:  5'- cGCGCgagGGGgcGGg-CCGCgggCGcGCGCCCg -3'
miRNA:   3'- -CGCG---UCCauCCagGGCGa--GU-CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 84049 0.67 0.744724
Target:  5'- uGCGCcaucgcggagaucgAGGUcgaccccuGGGcCCUGUUCGGgCACCCc -3'
miRNA:   3'- -CGCG--------------UCCA--------UCCaGGGCGAGUC-GUGGG- -5'
31005 3' -59.1 NC_006560.1 + 87877 0.75 0.318574
Target:  5'- gGCGCGGGUGGGggggcgcgccgUCCCGg-CcGCGCCCc -3'
miRNA:   3'- -CGCGUCCAUCC-----------AGGGCgaGuCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 88971 0.67 0.718822
Target:  5'- gGCGgAGGaucGG-CCgGCUCccccGGCGCCCg -3'
miRNA:   3'- -CGCgUCCau-CCaGGgCGAG----UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 89339 0.67 0.726558
Target:  5'- cGCGCGGGUucccucggAGGUCCUugggauucccCGGCGCCUc -3'
miRNA:   3'- -CGCGUCCA--------UCCAGGGcga-------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 92317 0.68 0.669616
Target:  5'- gGCGauucuGGUcGGGUCCCGC-CGGC-CCa -3'
miRNA:   3'- -CGCgu---CCA-UCCAGGGCGaGUCGuGGg -5'
31005 3' -59.1 NC_006560.1 + 93945 0.67 0.747562
Target:  5'- cGCGCAGcGcgAGGgcgagcgCCUGCUgGGCugUCu -3'
miRNA:   3'- -CGCGUC-Ca-UCCa------GGGCGAgUCGugGG- -5'
31005 3' -59.1 NC_006560.1 + 94379 0.66 0.793415
Target:  5'- -aGCAGGcccAGGUCCgGCUCgacgacaacgAGCugCg -3'
miRNA:   3'- cgCGUCCa--UCCAGGgCGAG----------UCGugGg -5'
31005 3' -59.1 NC_006560.1 + 96730 0.74 0.32574
Target:  5'- cGCGCGGGUcgAGGccuuccaCCGCUaCGGCACCa -3'
miRNA:   3'- -CGCGUCCA--UCCag-----GGCGA-GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 96786 0.71 0.47427
Target:  5'- -aGguGG-AGG-CCCGCUCGGUGuCCCg -3'
miRNA:   3'- cgCguCCaUCCaGGGCGAGUCGU-GGG- -5'
31005 3' -59.1 NC_006560.1 + 99981 0.69 0.619675
Target:  5'- cGCGuCGGGgccUGGGUCCguCGCgcccgggaAGCGCCCu -3'
miRNA:   3'- -CGC-GUCC---AUCCAGG--GCGag------UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 100188 0.77 0.236136
Target:  5'- cGCGCGGGUgAGcGUCUCgGCgccCGGCGCCCa -3'
miRNA:   3'- -CGCGUCCA-UC-CAGGG-CGa--GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 101242 0.71 0.47427
Target:  5'- cGCGCGGGUGcGGUUgaugaGCUCcAGCGCCg -3'
miRNA:   3'- -CGCGUCCAU-CCAGgg---CGAG-UCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 103038 0.7 0.579836
Target:  5'- cGCGCGGGgcgcGGGcggCCGCUCGGgGgCCg -3'
miRNA:   3'- -CGCGUCCa---UCCag-GGCGAGUCgUgGG- -5'
31005 3' -59.1 NC_006560.1 + 103076 0.66 0.780882
Target:  5'- cCGCGGGgacggggggaccGGUCCCGCccccgCGG-ACCCg -3'
miRNA:   3'- cGCGUCCau----------CCAGGGCGa----GUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 108418 0.73 0.403861
Target:  5'- cGCGuCAGGUAGccGUCggcgggagacgCCGCgccCAGCGCCCg -3'
miRNA:   3'- -CGC-GUCCAUC--CAG-----------GGCGa--GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 111983 0.68 0.699293
Target:  5'- aCGCGGGggaccuGGUcCCCGCgccgggcCAGCcggACCCg -3'
miRNA:   3'- cGCGUCCau----CCA-GGGCGa------GUCG---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.