miRNA display CGI


Results 81 - 100 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 67284 0.76 0.278075
Target:  5'- gGCcCGGGUGGGUCgCCGCUC--CACCCc -3'
miRNA:   3'- -CGcGUCCAUCCAG-GGCGAGucGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 65324 0.68 0.649672
Target:  5'- gGCGaaucaGGGUGGGggCCgGCUCgccGGC-CCCa -3'
miRNA:   3'- -CGCg----UCCAUCCa-GGgCGAG---UCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 64844 0.7 0.579836
Target:  5'- -aGCAGGcugGGGUCgCGCgcgcCGGCgcGCCCa -3'
miRNA:   3'- cgCGUCCa--UCCAGgGCGa---GUCG--UGGG- -5'
31005 3' -59.1 NC_006560.1 + 62748 0.73 0.402186
Target:  5'- cCGCAGG-GGGUggUCCGCggcgaggcacggCAGCGCCCg -3'
miRNA:   3'- cGCGUCCaUCCA--GGGCGa-----------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 61066 0.67 0.756961
Target:  5'- aGCGCAGGggcccgUGGG-CgCUGCUgaAGCGCCUc -3'
miRNA:   3'- -CGCGUCC------AUCCaG-GGCGAg-UCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 60662 0.76 0.278075
Target:  5'- cGCGCGGGggcgAGGggccCCCGCgccccUGGCGCCCc -3'
miRNA:   3'- -CGCGUCCa---UCCa---GGGCGa----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 58375 0.76 0.259413
Target:  5'- cCGCGGGgggAGcGgcgCCCGCgUCGGCGCCCc -3'
miRNA:   3'- cGCGUCCa--UC-Ca--GGGCG-AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 57254 0.71 0.492824
Target:  5'- gGCGCGGGggggccucgGGGUCCgGCgCGGC-CUCg -3'
miRNA:   3'- -CGCGUCCa--------UCCAGGgCGaGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 57049 0.7 0.560104
Target:  5'- -aGCGGGguggugAGGUCCCaCggaacCAGCGCCUg -3'
miRNA:   3'- cgCGUCCa-----UCCAGGGcGa----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 56382 0.66 0.802202
Target:  5'- cGCGCGGGgccggggaGGGUacgguugcCCCGCgCGGgGCCg -3'
miRNA:   3'- -CGCGUCCa-------UCCA--------GGGCGaGUCgUGGg -5'
31005 3' -59.1 NC_006560.1 + 56043 0.67 0.732328
Target:  5'- uGCGUGGGgaAGGUCCCGUcgacCGaguacagcgggggguGCGCCCc -3'
miRNA:   3'- -CGCGUCCa-UCCAGGGCGa---GU---------------CGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 55771 0.68 0.659654
Target:  5'- aCGCGGGUGcGcaCCCGCUCcggAGCGgCCa -3'
miRNA:   3'- cGCGUCCAU-CcaGGGCGAG---UCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 55499 0.67 0.728484
Target:  5'- cCGCGGGcgcgGGGUCggCGCcCAGCAgCCa -3'
miRNA:   3'- cGCGUCCa---UCCAGg-GCGaGUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 55439 0.73 0.403861
Target:  5'- aGCGCAGGcGGGcgagCCCGg--GGCGCCCg -3'
miRNA:   3'- -CGCGUCCaUCCa---GGGCgagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 54706 0.71 0.483504
Target:  5'- cGUGgGGGUcGGGUCCCagGCcaGGCACCCc -3'
miRNA:   3'- -CGCgUCCA-UCCAGGG--CGagUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 54651 0.68 0.703218
Target:  5'- cGCGCGGGaugaGGGUCgcgggggcgcggcagCCGC-CGGCcgcGCCCu -3'
miRNA:   3'- -CGCGUCCa---UCCAG---------------GGCGaGUCG---UGGG- -5'
31005 3' -59.1 NC_006560.1 + 53833 0.66 0.766254
Target:  5'- -gGCGGGccggcccGGG-CCgGC-CGGCACCCg -3'
miRNA:   3'- cgCGUCCa------UCCaGGgCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 53762 0.73 0.395532
Target:  5'- cGCuGCGGGgcGG-CCCGUcggucgCGGCGCCCc -3'
miRNA:   3'- -CG-CGUCCauCCaGGGCGa-----GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 53175 0.66 0.799581
Target:  5'- gGUGgAGGUGGuGUCCaucguccaccaccaCGCcCAGUACCUg -3'
miRNA:   3'- -CGCgUCCAUC-CAGG--------------GCGaGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 52960 0.67 0.728484
Target:  5'- uGCGCGGccccGG-CCCGCgCGGCcCCCg -3'
miRNA:   3'- -CGCGUCcau-CCaGGGCGaGUCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.