miRNA display CGI


Results 41 - 60 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 3' -59.1 NC_006560.1 + 45780 0.66 0.802202
Target:  5'- gGCGCGGGcucGGU-CCGC-CGGgGCCUu -3'
miRNA:   3'- -CGCGUCCau-CCAgGGCGaGUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 79848 0.66 0.802202
Target:  5'- gGCGCGGaccgagccGGGccgccCCCGCccccgccacgccUCGGCACCCg -3'
miRNA:   3'- -CGCGUCca------UCCa----GGGCG------------AGUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 75702 0.66 0.802202
Target:  5'- cCGCcuGGacUGGGggCCCGCguUCGGCGCCg -3'
miRNA:   3'- cGCGu-CC--AUCCa-GGGCG--AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 76514 0.66 0.805676
Target:  5'- cGCGCGGcgcGUcuucGGGgcgcaCCCGCUgaccgccgcgcgcgaCGGCGCCCc -3'
miRNA:   3'- -CGCGUC---CA----UCCa----GGGCGA---------------GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 78114 0.65 0.809985
Target:  5'- gGCGCuGGUGgcGGUCagcgUGCUCGGCcgcauguGCCUg -3'
miRNA:   3'- -CGCGuCCAU--CCAGg---GCGAGUCG-------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 145831 0.66 0.793415
Target:  5'- cGCGCGGcGggccgGGGgcgcCCCcCUCGGCcCCCc -3'
miRNA:   3'- -CGCGUC-Ca----UCCa---GGGcGAGUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 94379 0.66 0.793415
Target:  5'- -aGCAGGcccAGGUCCgGCUCgacgacaacgAGCugCg -3'
miRNA:   3'- cgCGUCCa--UCCAGGgCGAG----------UCGugGg -5'
31005 3' -59.1 NC_006560.1 + 11739 0.66 0.775433
Target:  5'- gGCGCGGGg----CCCGCagCGGCGCguCCg -3'
miRNA:   3'- -CGCGUCCauccaGGGCGa-GUCGUG--GG- -5'
31005 3' -59.1 NC_006560.1 + 147919 0.66 0.775433
Target:  5'- gGgGCGGGggagAGGgggCCCGC--GGCcCCCg -3'
miRNA:   3'- -CgCGUCCa---UCCa--GGGCGagUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 17769 0.66 0.775433
Target:  5'- gGCaGCGGGUAGucGUCguCCGCUCgacggccuccGGCcGCCCg -3'
miRNA:   3'- -CG-CGUCCAUC--CAG--GGCGAG----------UCG-UGGG- -5'
31005 3' -59.1 NC_006560.1 + 117988 0.66 0.775433
Target:  5'- gGCGCGGc--GGcgCCCGCggCGGCGgCCg -3'
miRNA:   3'- -CGCGUCcauCCa-GGGCGa-GUCGUgGG- -5'
31005 3' -59.1 NC_006560.1 + 134458 0.66 0.775433
Target:  5'- gGCGCGGGcGGccCCCGCgggcccgCGGUcCCCg -3'
miRNA:   3'- -CGCGUCCaUCcaGGGCGa------GUCGuGGG- -5'
31005 3' -59.1 NC_006560.1 + 43769 0.66 0.775433
Target:  5'- uGCGCGGGccGG-CgCCGUugaccgcgacggUCAGCGCCa -3'
miRNA:   3'- -CGCGUCCauCCaG-GGCG------------AGUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 103076 0.66 0.780882
Target:  5'- cCGCGGGgacggggggaccGGUCCCGCccccgCGG-ACCCg -3'
miRNA:   3'- cGCGUCCau----------CCAGGGCGa----GUCgUGGG- -5'
31005 3' -59.1 NC_006560.1 + 3521 0.66 0.781786
Target:  5'- gGCGCAGGcucuGGUUCCggaagagcaggucgGCggcggCGGCGCCg -3'
miRNA:   3'- -CGCGUCCau--CCAGGG--------------CGa----GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 26849 0.66 0.784489
Target:  5'- gGCGCGGcc-GGcCgCCGCccccCGGCGCCCg -3'
miRNA:   3'- -CGCGUCcauCCaG-GGCGa---GUCGUGGG- -5'
31005 3' -59.1 NC_006560.1 + 70925 0.66 0.784489
Target:  5'- gGCGCcuGGGgggacuacagccUGGGg-CCGCUCGGCACgaCCa -3'
miRNA:   3'- -CGCG--UCC------------AUCCagGGCGAGUCGUG--GG- -5'
31005 3' -59.1 NC_006560.1 + 134103 0.66 0.784489
Target:  5'- cGCGCAGGcgcucgauGGUCCCGaagaGGUuguugauguaGCCCu -3'
miRNA:   3'- -CGCGUCCau------CCAGGGCgag-UCG----------UGGG- -5'
31005 3' -59.1 NC_006560.1 + 16311 0.66 0.785388
Target:  5'- gGCGCGGGcccgcgCCCGCgaggcgcaggcacagCAGCGCCg -3'
miRNA:   3'- -CGCGUCCaucca-GGGCGa--------------GUCGUGGg -5'
31005 3' -59.1 NC_006560.1 + 140373 0.66 0.792529
Target:  5'- gGCGCGGcccgAGGUCCgguCGUccccgggggggguUCAGCGCCg -3'
miRNA:   3'- -CGCGUCca--UCCAGG---GCG-------------AGUCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.