Results 41 - 60 of 554 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31006 | 5' | -61 | NC_006560.1 | + | 87048 | 0.66 | 0.723148 |
Target: 5'- -gAUGCCGgCGAGC-CG-GGCCACggCCg -3' miRNA: 3'- caUGUGGCgGCUCGaGCgCCGGUG--GG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 123041 | 0.66 | 0.723148 |
Target: 5'- ---aGCUGgCGGGCccgCGCGGCgagCACCCc -3' miRNA: 3'- caugUGGCgGCUCGa--GCGCCG---GUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 131508 | 0.66 | 0.723148 |
Target: 5'- -cGCgGCCGUCGGGCU-GCGGCUcgaggcggcgGCCg -3' miRNA: 3'- caUG-UGGCGGCUCGAgCGCCGG----------UGGg -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 24349 | 0.66 | 0.723148 |
Target: 5'- -gGC-CCGCUGcGC-CGCGccGCCGCCUg -3' miRNA: 3'- caUGuGGCGGCuCGaGCGC--CGGUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 40106 | 0.66 | 0.723148 |
Target: 5'- -cGgGCCGCCGGGCggagacUCGCGucguCCAUCUg -3' miRNA: 3'- caUgUGGCGGCUCG------AGCGCc---GGUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 10235 | 0.66 | 0.723148 |
Target: 5'- gGUGgGCgGCgGgGGCgcgggUCGCGGCgGCCCc -3' miRNA: 3'- -CAUgUGgCGgC-UCG-----AGCGCCGgUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 116795 | 0.66 | 0.723148 |
Target: 5'- cGUACA-CGuaGAGCUCGggggccaugaGGCCGCCg -3' miRNA: 3'- -CAUGUgGCggCUCGAGCg---------CCGGUGGg -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 53567 | 0.66 | 0.713571 |
Target: 5'- cGUGCGCgCGUCGcGCccgggCGCaGCgCGCCCg -3' miRNA: 3'- -CAUGUG-GCGGCuCGa----GCGcCG-GUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 73867 | 0.66 | 0.713571 |
Target: 5'- -gGCGCUGCUG-GC-CGgGGaCGCCCg -3' miRNA: 3'- caUGUGGCGGCuCGaGCgCCgGUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 146849 | 0.66 | 0.713571 |
Target: 5'- -gGCGgCGCgGGGCgggGCGGC-GCCCg -3' miRNA: 3'- caUGUgGCGgCUCGag-CGCCGgUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 2219 | 0.66 | 0.713571 |
Target: 5'- -aGCGCCagguagaCGGGCcgcaGCGGCgCACCCa -3' miRNA: 3'- caUGUGGcg-----GCUCGag--CGCCG-GUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 13781 | 0.66 | 0.713571 |
Target: 5'- -cGCGCCgGCuCGAucgcccucgguGUUCGgGGCCGCgCCg -3' miRNA: 3'- caUGUGG-CG-GCU-----------CGAGCgCCGGUG-GG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 27524 | 0.66 | 0.713571 |
Target: 5'- cGgcCGCCGUCGGucucucucGCgCGCGGCCuuCCg -3' miRNA: 3'- -CauGUGGCGGCU--------CGaGCGCCGGugGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 47686 | 0.66 | 0.713571 |
Target: 5'- -cGguCCGCCu--CUCGCcGCCGCCCg -3' miRNA: 3'- caUguGGCGGcucGAGCGcCGGUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 70666 | 0.66 | 0.713571 |
Target: 5'- -cGCGCUGgCGgcGGCUgGCcGCCGCCUa -3' miRNA: 3'- caUGUGGCgGC--UCGAgCGcCGGUGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 101285 | 0.66 | 0.713571 |
Target: 5'- -aGCGCCGCCuGGCg---GGCC-CCCg -3' miRNA: 3'- caUGUGGCGGcUCGagcgCCGGuGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 125005 | 0.66 | 0.713571 |
Target: 5'- -gACGCCGgCGAcCcCGUGGUCGCCg -3' miRNA: 3'- caUGUGGCgGCUcGaGCGCCGGUGGg -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 84785 | 0.66 | 0.71741 |
Target: 5'- -cGCGCCuuucuggccucgcugGCUGuGCUgGCGGaCCGCCa -3' miRNA: 3'- caUGUGG---------------CGGCuCGAgCGCC-GGUGGg -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 149263 | 0.66 | 0.721238 |
Target: 5'- -gGCuuCCGCCGGGCgccucccccuCGGCCcGCCCc -3' miRNA: 3'- caUGu-GGCGGCUCGagc-------GCCGG-UGGG- -5' |
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31006 | 5' | -61 | NC_006560.1 | + | 55106 | 0.66 | 0.722193 |
Target: 5'- -gGCGCCGCCucuccGGCcccucccUCGCcGUCACCCc -3' miRNA: 3'- caUGUGGCGGc----UCG-------AGCGcCGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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