Results 41 - 60 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31007 | 5' | -60.6 | NC_006560.1 | + | 8261 | 0.66 | 0.772589 |
Target: 5'- gUGCGCCccguGCCCUCccccgCCCaCGGGGg -3' miRNA: 3'- gAUGUGG----UGGGAGcuccaGGG-GCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 32757 | 0.66 | 0.772589 |
Target: 5'- -cGCGCCgGCCgggguCUCGGGGUCCgaGGGc -3' miRNA: 3'- gaUGUGG-UGG-----GAGCUCCAGGggCCCc -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 119236 | 0.66 | 0.772589 |
Target: 5'- -cGgACCGCCCaaucgUCGuGGUCUUCGGcGGu -3' miRNA: 3'- gaUgUGGUGGG-----AGCuCCAGGGGCC-CC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 145536 | 0.66 | 0.772589 |
Target: 5'- -gAC-CCGCCCUCGg---CgCCGGGGa -3' miRNA: 3'- gaUGuGGUGGGAGCuccaGgGGCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 6496 | 0.66 | 0.772589 |
Target: 5'- -cGCGCCGacggaaCCUCGcAGGUgagcggucgUCCCGGGa -3' miRNA: 3'- gaUGUGGUg-----GGAGC-UCCA---------GGGGCCCc -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 135575 | 0.66 | 0.763575 |
Target: 5'- -gGCACCGCCUggagcccgCGcGGGUgCCCCGGc- -3' miRNA: 3'- gaUGUGGUGGGa-------GC-UCCA-GGGGCCcc -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 58839 | 0.66 | 0.763575 |
Target: 5'- -aGCugCA-CgUCGGGGcggCCCUGGGGc -3' miRNA: 3'- gaUGugGUgGgAGCUCCa--GGGGCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 27936 | 0.66 | 0.745234 |
Target: 5'- -gGCGCCucgcGCCCcCGcg--CCCCGGGGg -3' miRNA: 3'- gaUGUGG----UGGGaGCuccaGGGGCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 46988 | 0.66 | 0.745234 |
Target: 5'- -cGCGCgucuCCUUCGAGGagCCCGcGGGc -3' miRNA: 3'- gaUGUGgu--GGGAGCUCCagGGGC-CCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 74605 | 0.66 | 0.745234 |
Target: 5'- ---gGCCACCCUCcGGGcggaccUCCCgGGcGGg -3' miRNA: 3'- gaugUGGUGGGAGcUCC------AGGGgCC-CC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 55807 | 0.66 | 0.753536 |
Target: 5'- --uCGCCGCCCUCGAaccagcggaaggcGGcgccgUCgCCCGGGu -3' miRNA: 3'- gauGUGGUGGGAGCU-------------CC-----AG-GGGCCCc -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 143428 | 0.66 | 0.754454 |
Target: 5'- -cACACC-CCCguccCGcGGUacgCCCGGGGc -3' miRNA: 3'- gaUGUGGuGGGa---GCuCCAg--GGGCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 28943 | 0.66 | 0.754454 |
Target: 5'- -aACAUggCGCCCgUCGGGGccgCCCCaacGGGGc -3' miRNA: 3'- gaUGUG--GUGGG-AGCUCCa--GGGG---CCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 40922 | 0.66 | 0.754454 |
Target: 5'- -gGCACaGCgCggCGGGGUCCCgCGGGu -3' miRNA: 3'- gaUGUGgUGgGa-GCUCCAGGG-GCCCc -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 88178 | 0.66 | 0.754454 |
Target: 5'- -cGCgGCCAUCCgcucgcaGAGGUCgCgGGGGg -3' miRNA: 3'- gaUG-UGGUGGGag-----CUCCAGgGgCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 31112 | 0.66 | 0.754454 |
Target: 5'- -aGCGcCCGgCCUCG-GG-CgCCGGGGg -3' miRNA: 3'- gaUGU-GGUgGGAGCuCCaGgGGCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 124329 | 0.66 | 0.754454 |
Target: 5'- -aGCGCCACCUcCGcGGGUUgCUGcGGGg -3' miRNA: 3'- gaUGUGGUGGGaGC-UCCAGgGGC-CCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 5135 | 0.66 | 0.758115 |
Target: 5'- -cACACCgacucgcggcgcgggGCCCgggcCGGGG-CCgCGGGGg -3' miRNA: 3'- gaUGUGG---------------UGGGa---GCUCCaGGgGCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 35506 | 0.66 | 0.761759 |
Target: 5'- -cGCGCCGCCCg-GAGGccgcgccUCCCauuagggcccgcgCGGGGc -3' miRNA: 3'- gaUGUGGUGGGagCUCC-------AGGG-------------GCCCC- -5' |
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31007 | 5' | -60.6 | NC_006560.1 | + | 47995 | 0.66 | 0.763575 |
Target: 5'- uCU-CGCCGCCCcCGcccgccGGcCCCCGGGc -3' miRNA: 3'- -GAuGUGGUGGGaGCu-----CCaGGGGCCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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