miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 55031 0.67 0.945049
Target:  5'- gGCgCGCGGCGAgacgagcgacggaUCGUcuGGGCGUCgCCg -3'
miRNA:   3'- aCGaGCGUCGUU-------------AGCAc-UUCGCAG-GG- -5'
31008 5' -53.6 NC_006560.1 + 26573 0.67 0.940883
Target:  5'- cGUgagCGCGGCGGcCG-GAAGCGaaCCCg -3'
miRNA:   3'- aCGa--GCGUCGUUaGCaCUUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 93815 0.67 0.940883
Target:  5'- aGCUCGCGGCGc---UGAAGCucaacgCCCu -3'
miRNA:   3'- aCGAGCGUCGUuagcACUUCGca----GGG- -5'
31008 5' -53.6 NC_006560.1 + 19393 0.67 0.940883
Target:  5'- cGCUCGCGGCAcgggccgggcgaGUCGccGcGGCGgcgCUCg -3'
miRNA:   3'- aCGAGCGUCGU------------UAGCa-CuUCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 101555 0.67 0.940883
Target:  5'- aGCU-GCAgGCGGUUGUcGAGGCgGUCCg -3'
miRNA:   3'- aCGAgCGU-CGUUAGCA-CUUCG-CAGGg -5'
31008 5' -53.6 NC_006560.1 + 100173 0.67 0.940883
Target:  5'- gGCgguggagaGCAGCGcgCGgguGAGCGUCUCg -3'
miRNA:   3'- aCGag------CGUCGUuaGCac-UUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 38426 0.67 0.940883
Target:  5'- aGCUCGCAGguG-CGacUGGAGCacUCCUg -3'
miRNA:   3'- aCGAGCGUCguUaGC--ACUUCGc-AGGG- -5'
31008 5' -53.6 NC_006560.1 + 51149 0.67 0.936518
Target:  5'- cUGcCUCGCGGCGcgCGaggccgccuuucuggGgcGCGUCCUc -3'
miRNA:   3'- -AC-GAGCGUCGUuaGCa--------------CuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 55339 0.68 0.901649
Target:  5'- gGCUCGUGGCGGcCGUGguGC-UCCa -3'
miRNA:   3'- aCGAGCGUCGUUaGCACuuCGcAGGg -5'
31008 5' -53.6 NC_006560.1 + 59667 0.68 0.895063
Target:  5'- gGCUUGCccgcggcuGCAAUUauaaGAAGCGUCCUg -3'
miRNA:   3'- aCGAGCGu-------CGUUAGca--CUUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 3231 0.68 0.895063
Target:  5'- gGCggGCGGCGG-CGUGuGGGCGggCCCg -3'
miRNA:   3'- aCGagCGUCGUUaGCAC-UUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 91327 0.68 0.895063
Target:  5'- aGCUCGagaaccuGCAGUaCGUGGacccGGCGgugCCCa -3'
miRNA:   3'- aCGAGCgu-----CGUUA-GCACU----UCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 150096 0.68 0.907993
Target:  5'- aGCUCggGCAGCAggCGc-GAGCG-CCCa -3'
miRNA:   3'- aCGAG--CGUCGUuaGCacUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 121727 0.68 0.907993
Target:  5'- gGCggGCAGCccggCG-GggGCGUCCg -3'
miRNA:   3'- aCGagCGUCGuua-GCaCuuCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 138841 0.68 0.907993
Target:  5'- cGUugUCGCGGUGGaCGUGGaccggGGCGUCCg -3'
miRNA:   3'- aCG--AGCGUCGUUaGCACU-----UCGCAGGg -5'
31008 5' -53.6 NC_006560.1 + 81051 0.68 0.907993
Target:  5'- cGCUCGCccAGCGggugGUCGUGGGuGUgGUCCa -3'
miRNA:   3'- aCGAGCG--UCGU----UAGCACUU-CG-CAGGg -5'
31008 5' -53.6 NC_006560.1 + 65851 0.68 0.914093
Target:  5'- gUGC-CGCAuGCAG-CG-GggGUGUCCUc -3'
miRNA:   3'- -ACGaGCGU-CGUUaGCaCuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 81767 0.68 0.914093
Target:  5'- cUGCUCgGCcGUGAUCGUGccccccGGCGcCCCc -3'
miRNA:   3'- -ACGAG-CGuCGUUAGCACu-----UCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 127155 0.68 0.914093
Target:  5'- gGgUCGCGGCGucgagcUCG-GcGGCGUCCUg -3'
miRNA:   3'- aCgAGCGUCGUu-----AGCaCuUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 80918 0.69 0.881179
Target:  5'- cGCggggCGCAGcCAGUCGccGGGCGccUCCCc -3'
miRNA:   3'- aCGa---GCGUC-GUUAGCacUUCGC--AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.