miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31008 5' -53.6 NC_006560.1 + 101555 0.67 0.940883
Target:  5'- aGCU-GCAgGCGGUUGUcGAGGCgGUCCg -3'
miRNA:   3'- aCGAgCGU-CGUUAGCA-CUUCG-CAGGg -5'
31008 5' -53.6 NC_006560.1 + 82068 0.67 0.9455
Target:  5'- aGUccgCGCGGCGGUCGgcguagGAcuuucGGCGaCCCa -3'
miRNA:   3'- aCGa--GCGUCGUUAGCa-----CU-----UCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 131165 0.67 0.9455
Target:  5'- gGCUCuggGCGGCGGcCGccgcgGggGCG-CCCg -3'
miRNA:   3'- aCGAG---CGUCGUUaGCa----CuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 78164 0.67 0.9455
Target:  5'- cGCUCGCcgcucuGUggUCGUGcauGUuUCCCg -3'
miRNA:   3'- aCGAGCGu-----CGuuAGCACuu-CGcAGGG- -5'
31008 5' -53.6 NC_006560.1 + 95952 0.67 0.925553
Target:  5'- aGCUCGCGGCcggCGggccGGAGuCGacgCCCg -3'
miRNA:   3'- aCGAGCGUCGuuaGCa---CUUC-GCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 27626 0.67 0.930911
Target:  5'- aGCUCGCGGCGGgcgCGgccgggcgcGggGCGcggCCg -3'
miRNA:   3'- aCGAGCGUCGUUa--GCa--------CuuCGCa--GGg -5'
31008 5' -53.6 NC_006560.1 + 51149 0.67 0.936518
Target:  5'- cUGcCUCGCGGCGcgCGaggccgccuuucuggGgcGCGUCCUc -3'
miRNA:   3'- -AC-GAGCGUCGUuaGCa--------------CuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 18621 0.67 0.93602
Target:  5'- gGCgCGCGGCucGUCGccguucGCGUCCCc -3'
miRNA:   3'- aCGaGCGUCGu-UAGCacuu--CGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 147935 0.67 0.93602
Target:  5'- gGCcCGCGGCcccCGgGAGGCGggCCCg -3'
miRNA:   3'- aCGaGCGUCGuuaGCaCUUCGCa-GGG- -5'
31008 5' -53.6 NC_006560.1 + 146842 0.67 0.93602
Target:  5'- gUGCU-GCGGCGGcgCGgggcGggGCGgcgCCCg -3'
miRNA:   3'- -ACGAgCGUCGUUa-GCa---CuuCGCa--GGG- -5'
31008 5' -53.6 NC_006560.1 + 133149 0.67 0.93602
Target:  5'- gGC-CGCGGCAGcgCGcGAAGUaGUCCUc -3'
miRNA:   3'- aCGaGCGUCGUUa-GCaCUUCG-CAGGG- -5'
31008 5' -53.6 NC_006560.1 + 115749 0.67 0.93602
Target:  5'- gGCggCGCAGCuGAUCcacccGAGGCG-CCCg -3'
miRNA:   3'- aCGa-GCGUCG-UUAGca---CUUCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 69450 0.67 0.93602
Target:  5'- gGCcgCGgGGCuggCGgGggGCGUCCUg -3'
miRNA:   3'- aCGa-GCgUCGuuaGCaCuuCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 118859 0.67 0.930911
Target:  5'- cGCcuUUGCGGCGcgCGUGcagacGGCGUgCCu -3'
miRNA:   3'- aCG--AGCGUCGUuaGCACu----UCGCAgGG- -5'
31008 5' -53.6 NC_006560.1 + 52329 0.67 0.930911
Target:  5'- gGCUCGuCGGCGcggcCGUGG-GCG-CCCu -3'
miRNA:   3'- aCGAGC-GUCGUua--GCACUuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 42845 0.67 0.930911
Target:  5'- gGCgggGCGGCGGgccagcCGUGggGCGUCa- -3'
miRNA:   3'- aCGag-CGUCGUUa-----GCACuuCGCAGgg -5'
31008 5' -53.6 NC_006560.1 + 34779 0.67 0.930911
Target:  5'- cGCcCGCAGguGUCG-GggGCugcgggGUUCCg -3'
miRNA:   3'- aCGaGCGUCguUAGCaCuuCG------CAGGG- -5'
31008 5' -53.6 NC_006560.1 + 10425 0.67 0.925553
Target:  5'- gGcCUCGCGGag--CGUc-AGCGUCCCg -3'
miRNA:   3'- aC-GAGCGUCguuaGCAcuUCGCAGGG- -5'
31008 5' -53.6 NC_006560.1 + 97373 0.66 0.957904
Target:  5'- aGCagaCGCGGCGGcCGgccgGggGCGaCCCc -3'
miRNA:   3'- aCGa--GCGUCGUUaGCa---CuuCGCaGGG- -5'
31008 5' -53.6 NC_006560.1 + 106233 0.66 0.957904
Target:  5'- gGCUCGC-GU--UCGUGGAGaccgCCCg -3'
miRNA:   3'- aCGAGCGuCGuuAGCACUUCgca-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.