miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 3' -55.6 NC_006560.1 + 1986 0.68 0.842483
Target:  5'- -cUCGGGGCCGGGccAGCUCcaGGGCggcGGc -3'
miRNA:   3'- gaGGCCCCGGUCU--UUGAG--CUCGaa-CC- -5'
31009 3' -55.6 NC_006560.1 + 149763 0.68 0.842483
Target:  5'- -cCCGGGGCgCGGggGCgUCGAgGCg--- -3'
miRNA:   3'- gaGGCCCCG-GUCuuUG-AGCU-CGaacc -5'
31009 3' -55.6 NC_006560.1 + 26389 0.68 0.858259
Target:  5'- -gCCGGGGCgCAGggGCgcgccccCGGGCg--- -3'
miRNA:   3'- gaGGCCCCG-GUCuuUGa------GCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 50690 0.68 0.858259
Target:  5'- -gCCaGGGCCAGGAGCU--GGCcUGGc -3'
miRNA:   3'- gaGGcCCCGGUCUUUGAgcUCGaACC- -5'
31009 3' -55.6 NC_006560.1 + 28193 0.69 0.772382
Target:  5'- gUCCcGGGCCGGcgGCcCGGGCggGGa -3'
miRNA:   3'- gAGGcCCCGGUCuuUGaGCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 45834 0.69 0.799843
Target:  5'- -aCCGGGGUCGuGAGGC-CGAGCg--- -3'
miRNA:   3'- gaGGCCCCGGU-CUUUGaGCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 133520 0.69 0.799843
Target:  5'- -gCCGGGGUCGGcgGCUucgUGGGCggGGa -3'
miRNA:   3'- gaGGCCCCGGUCuuUGA---GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 137092 0.69 0.799843
Target:  5'- -cCCGGGGCUGGAcGCggccaagCGGGCccGGg -3'
miRNA:   3'- gaGGCCCCGGUCUuUGa------GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 14811 0.69 0.808706
Target:  5'- gCUCgGGGGCCGGAGGgUC-AGCg--- -3'
miRNA:   3'- -GAGgCCCCGGUCUUUgAGcUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 146001 0.69 0.808706
Target:  5'- -aCCGGGGucauCCAGAGGCcgUGGGCggGGu -3'
miRNA:   3'- gaGGCCCC----GGUCUUUGa-GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 54923 0.69 0.814816
Target:  5'- gCUCgGGGGCCGGGgcggccaucgucggGGCUCGcgcgccggcGGCggGGg -3'
miRNA:   3'- -GAGgCCCCGGUCU--------------UUGAGC---------UCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 122779 0.7 0.734066
Target:  5'- -cCCGGGGCCcGGAGCUucggCGGGUccGGg -3'
miRNA:   3'- gaGGCCCCGGuCUUUGA----GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 147272 0.7 0.734066
Target:  5'- cCUCUGGcGGCC-GggGC-CGGGCggGGg -3'
miRNA:   3'- -GAGGCC-CCGGuCuuUGaGCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 105669 0.7 0.734066
Target:  5'- -cCCGGGGCCuacuccguccGGGAGCUCGcGGCgacccaccUGGa -3'
miRNA:   3'- gaGGCCCCGG----------UCUUUGAGC-UCGa-------ACC- -5'
31009 3' -55.6 NC_006560.1 + 6539 0.7 0.753437
Target:  5'- cCUCgGGGGCUcggGGGGACggGGGCUcGGg -3'
miRNA:   3'- -GAGgCCCCGG---UCUUUGagCUCGAaCC- -5'
31009 3' -55.6 NC_006560.1 + 6703 0.7 0.753437
Target:  5'- -aCCGGGgGCuCGGggGCUCGGGg--GGa -3'
miRNA:   3'- gaGGCCC-CG-GUCuuUGAGCUCgaaCC- -5'
31009 3' -55.6 NC_006560.1 + 6803 0.7 0.753437
Target:  5'- -aCCGGGgGCuCGGggGCUCGGGg--GGa -3'
miRNA:   3'- gaGGCCC-CG-GUCuuUGAGCUCgaaCC- -5'
31009 3' -55.6 NC_006560.1 + 83726 0.7 0.753437
Target:  5'- -gCCGGGGCCcgucccgacgcGGAGCUCGGGCcccucaUGGc -3'
miRNA:   3'- gaGGCCCCGGu----------CUUUGAGCUCGa-----ACC- -5'
31009 3' -55.6 NC_006560.1 + 39377 0.71 0.704372
Target:  5'- -cCCGGcGCCGGGAcccccgggccgaACUCGGGCUcGGg -3'
miRNA:   3'- gaGGCCcCGGUCUU------------UGAGCUCGAaCC- -5'
31009 3' -55.6 NC_006560.1 + 146957 0.71 0.684256
Target:  5'- -gUCaGGGCCGGggGC-CGGGCcUGGg -3'
miRNA:   3'- gaGGcCCCGGUCuuUGaGCUCGaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.