Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31009 | 3' | -55.6 | NC_006560.1 | + | 121501 | 1.1 | 0.002861 |
Target: 5'- gCUCCGGGGCCAGAAACUCGAGCUUGGu -3' miRNA: 3'- -GAGGCCCCGGUCUUUGAGCUCGAACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 6619 | 0.78 | 0.338122 |
Target: 5'- gCUCgGGGGaCCGGggGCUCGggGGCUcGGg -3' miRNA: 3'- -GAGgCCCC-GGUCuuUGAGC--UCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 32459 | 0.78 | 0.345768 |
Target: 5'- --aCGGGGCCGGggGCUgCGGGCUcccccgGGg -3' miRNA: 3'- gagGCCCCGGUCuuUGA-GCUCGAa-----CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 35300 | 0.77 | 0.377575 |
Target: 5'- gUCCGGGGgcgcggCGGggGCUCGGGCUcGGc -3' miRNA: 3'- gAGGCCCCg-----GUCuuUGAGCUCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 32692 | 0.76 | 0.401834 |
Target: 5'- -gCCGGGGCCGGggGCUCcgcccgaGGGCgcgcGGg -3' miRNA: 3'- gaGGCCCCGGUCuuUGAG-------CUCGaa--CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 6777 | 0.75 | 0.465202 |
Target: 5'- gCUCgGGGGCuCGGggGCUCGGGg--GGa -3' miRNA: 3'- -GAGgCCCCG-GUCuuUGAGCUCgaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 6735 | 0.73 | 0.552258 |
Target: 5'- gCUCgGGGGgaCCGGggGCUCGggGGCUcGGg -3' miRNA: 3'- -GAGgCCCC--GGUCuuUGAGC--UCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 39899 | 0.73 | 0.552258 |
Target: 5'- uCUCCGucguucGGGCCGGGGugcGCUCGGGUggcUGGg -3' miRNA: 3'- -GAGGC------CCCGGUCUU---UGAGCUCGa--ACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 6668 | 0.73 | 0.552258 |
Target: 5'- gCUCgGGGGgaCCGGggGCUCGggGGCUcGGg -3' miRNA: 3'- -GAGgCCCC--GGUCuuUGAGC--UCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 32134 | 0.73 | 0.562273 |
Target: 5'- -cCCGGGGCCGGucACggcCGGGCggGGc -3' miRNA: 3'- gaGGCCCCGGUCuuUGa--GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 32064 | 0.73 | 0.562273 |
Target: 5'- uCUCUGGGGgCAGggGCcgcagggCGGGCggGGg -3' miRNA: 3'- -GAGGCCCCgGUCuuUGa------GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 74123 | 0.73 | 0.582443 |
Target: 5'- -gCCGcGGGCCAGggGCUCGucgcccGCaaGGa -3' miRNA: 3'- gaGGC-CCCGGUCuuUGAGCu-----CGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 112512 | 0.73 | 0.602755 |
Target: 5'- --gCGGGGCCuGGAGCUC-AGCgUGGg -3' miRNA: 3'- gagGCCCCGGuCUUUGAGcUCGaACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 85573 | 0.72 | 0.633367 |
Target: 5'- gCUCgGGGGCgGGggGCgcggCGGGCgcGGc -3' miRNA: 3'- -GAGgCCCCGgUCuuUGa---GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 4545 | 0.72 | 0.653783 |
Target: 5'- -cCCGGGGgCGGggGCUCG-GCcccGGg -3' miRNA: 3'- gaGGCCCCgGUCuuUGAGCuCGaa-CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 3319 | 0.72 | 0.653783 |
Target: 5'- -gCCGcGGGCCGGggGCgCGGGCgggcGGc -3' miRNA: 3'- gaGGC-CCCGGUCuuUGaGCUCGaa--CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 6579 | 0.71 | 0.67413 |
Target: 5'- gCUCgGGGGCUcggggggacGGggGCUCGggGGCUcGGg -3' miRNA: 3'- -GAGgCCCCGG---------UCuuUGAGC--UCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 15462 | 0.71 | 0.67413 |
Target: 5'- -gCCcGGGCCAGggGCUCGucCUccUGGg -3' miRNA: 3'- gaGGcCCCGGUCuuUGAGCucGA--ACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 77263 | 0.71 | 0.678185 |
Target: 5'- -cCCGGGGCCccuGGAGCUgcgcgaggccaccagCGAGCU-GGa -3' miRNA: 3'- gaGGCCCCGGu--CUUUGA---------------GCUCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 146957 | 0.71 | 0.684256 |
Target: 5'- -gUCaGGGCCGGggGC-CGGGCcUGGg -3' miRNA: 3'- gaGGcCCCGGUCuuUGaGCUCGaACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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