Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31009 | 3' | -55.6 | NC_006560.1 | + | 54923 | 0.69 | 0.814816 |
Target: 5'- gCUCgGGGGCCGGGgcggccaucgucggGGCUCGcgcgccggcGGCggGGg -3' miRNA: 3'- -GAGgCCCCGGUCU--------------UUGAGC---------UCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 54381 | 0.67 | 0.900531 |
Target: 5'- -aCCGGGG--GGAAACgcgCGGGCggGGg -3' miRNA: 3'- gaGGCCCCggUCUUUGa--GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 50690 | 0.68 | 0.858259 |
Target: 5'- -gCCaGGGCCAGGAGCU--GGCcUGGc -3' miRNA: 3'- gaGGcCCCGGUCUUUGAgcUCGaACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 50261 | 0.66 | 0.906789 |
Target: 5'- cCUCCGGgcGGCCGG--GCUCGGcGCgcccccgGGg -3' miRNA: 3'- -GAGGCC--CCGGUCuuUGAGCU-CGaa-----CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 45834 | 0.69 | 0.799843 |
Target: 5'- -aCCGGGGUCGuGAGGC-CGAGCg--- -3' miRNA: 3'- gaGGCCCCGGU-CUUUGaGCUCGaacc -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 42069 | 0.68 | 0.834306 |
Target: 5'- cCUCCGcGGG-CGGggGCUCGuGCa--- -3' miRNA: 3'- -GAGGC-CCCgGUCuuUGAGCuCGaacc -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 41276 | 0.67 | 0.880383 |
Target: 5'- gCUCa-GGGCCAGGAACgucCGGGCg--- -3' miRNA: 3'- -GAGgcCCCGGUCUUUGa--GCUCGaacc -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 39899 | 0.73 | 0.552258 |
Target: 5'- uCUCCGucguucGGGCCGGGGugcGCUCGGGUggcUGGg -3' miRNA: 3'- -GAGGC------CCCGGUCUU---UGAGCUCGa--ACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 39377 | 0.71 | 0.704372 |
Target: 5'- -cCCGGcGCCGGGAcccccgggccgaACUCGGGCUcGGg -3' miRNA: 3'- gaGGCCcCGGUCUU------------UGAGCUCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 39027 | 0.66 | 0.924151 |
Target: 5'- gUCCGGGGCCGcGAACUgCGucccGCcgaagGGg -3' miRNA: 3'- gAGGCCCCGGUcUUUGA-GCu---CGaa---CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 38525 | 0.67 | 0.878258 |
Target: 5'- -cCCGGGGCCAcacccacggccgcguGCUCGAucucggucguccgguGCUUGGc -3' miRNA: 3'- gaGGCCCCGGUcuu------------UGAGCU---------------CGAACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 37543 | 0.67 | 0.873222 |
Target: 5'- -gCgGGcGGCCAuGccGCUCGAGCUgaUGGa -3' miRNA: 3'- gaGgCC-CCGGU-CuuUGAGCUCGA--ACC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 36120 | 0.66 | 0.918601 |
Target: 5'- -aCCGGGGCCGccgccgccGggG-UCGAGCcgGGc -3' miRNA: 3'- gaGGCCCCGGU--------CuuUgAGCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 35300 | 0.77 | 0.377575 |
Target: 5'- gUCCGGGGgcgcggCGGggGCUCGGGCUcGGc -3' miRNA: 3'- gAGGCCCCg-----GUCuuUGAGCUCGAaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 35119 | 0.66 | 0.934537 |
Target: 5'- gUCC-GGGCCGGGGuccGCUCGGGagaGGc -3' miRNA: 3'- gAGGcCCCGGUCUU---UGAGCUCgaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 34955 | 0.67 | 0.887325 |
Target: 5'- -cCCGGGGcCCGGgcGC-CGGGCUccgccGGg -3' miRNA: 3'- gaGGCCCC-GGUCuuUGaGCUCGAa----CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 33778 | 0.68 | 0.834306 |
Target: 5'- cCUCgCGGGGCCGuGggGCgcgcgaagucgCGGGCgcGGa -3' miRNA: 3'- -GAG-GCCCCGGU-CuuUGa----------GCUCGaaCC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 32692 | 0.76 | 0.401834 |
Target: 5'- -gCCGGGGCCGGggGCUCcgcccgaGGGCgcgcGGg -3' miRNA: 3'- gaGGCCCCGGUCuuUGAG-------CUCGaa--CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 32459 | 0.78 | 0.345768 |
Target: 5'- --aCGGGGCCGGggGCUgCGGGCUcccccgGGg -3' miRNA: 3'- gagGCCCCGGUCuuUGA-GCUCGAa-----CC- -5' |
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31009 | 3' | -55.6 | NC_006560.1 | + | 32134 | 0.73 | 0.562273 |
Target: 5'- -cCCGGGGCCGGucACggcCGGGCggGGc -3' miRNA: 3'- gaGGCCCCGGUCuuUGa--GCUCGaaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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