miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31009 3' -55.6 NC_006560.1 + 28193 0.69 0.772382
Target:  5'- gUCCcGGGCCGGcgGCcCGGGCggGGa -3'
miRNA:   3'- gAGGcCCCGGUCuuUGaGCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 32064 0.73 0.562273
Target:  5'- uCUCUGGGGgCAGggGCcgcagggCGGGCggGGg -3'
miRNA:   3'- -GAGGCCCCgGUCuuUGa------GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 32134 0.73 0.562273
Target:  5'- -cCCGGGGCCGGucACggcCGGGCggGGc -3'
miRNA:   3'- gaGGCCCCGGUCuuUGa--GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 32459 0.78 0.345768
Target:  5'- --aCGGGGCCGGggGCUgCGGGCUcccccgGGg -3'
miRNA:   3'- gagGCCCCGGUCuuUGA-GCUCGAa-----CC- -5'
31009 3' -55.6 NC_006560.1 + 32692 0.76 0.401834
Target:  5'- -gCCGGGGCCGGggGCUCcgcccgaGGGCgcgcGGg -3'
miRNA:   3'- gaGGCCCCGGUCuuUGAG-------CUCGaa--CC- -5'
31009 3' -55.6 NC_006560.1 + 33778 0.68 0.834306
Target:  5'- cCUCgCGGGGCCGuGggGCgcgcgaagucgCGGGCgcGGa -3'
miRNA:   3'- -GAG-GCCCCGGU-CuuUGa----------GCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 34955 0.67 0.887325
Target:  5'- -cCCGGGGcCCGGgcGC-CGGGCUccgccGGg -3'
miRNA:   3'- gaGGCCCC-GGUCuuUGaGCUCGAa----CC- -5'
31009 3' -55.6 NC_006560.1 + 35119 0.66 0.934537
Target:  5'- gUCC-GGGCCGGGGuccGCUCGGGagaGGc -3'
miRNA:   3'- gAGGcCCCGGUCUU---UGAGCUCgaaCC- -5'
31009 3' -55.6 NC_006560.1 + 35300 0.77 0.377575
Target:  5'- gUCCGGGGgcgcggCGGggGCUCGGGCUcGGc -3'
miRNA:   3'- gAGGCCCCg-----GUCuuUGAGCUCGAaCC- -5'
31009 3' -55.6 NC_006560.1 + 36120 0.66 0.918601
Target:  5'- -aCCGGGGCCGccgccgccGggG-UCGAGCcgGGc -3'
miRNA:   3'- gaGGCCCCGGU--------CuuUgAGCUCGaaCC- -5'
31009 3' -55.6 NC_006560.1 + 37543 0.67 0.873222
Target:  5'- -gCgGGcGGCCAuGccGCUCGAGCUgaUGGa -3'
miRNA:   3'- gaGgCC-CCGGU-CuuUGAGCUCGA--ACC- -5'
31009 3' -55.6 NC_006560.1 + 38525 0.67 0.878258
Target:  5'- -cCCGGGGCCAcacccacggccgcguGCUCGAucucggucguccgguGCUUGGc -3'
miRNA:   3'- gaGGCCCCGGUcuu------------UGAGCU---------------CGAACC- -5'
31009 3' -55.6 NC_006560.1 + 39027 0.66 0.924151
Target:  5'- gUCCGGGGCCGcGAACUgCGucccGCcgaagGGg -3'
miRNA:   3'- gAGGCCCCGGUcUUUGA-GCu---CGaa---CC- -5'
31009 3' -55.6 NC_006560.1 + 39377 0.71 0.704372
Target:  5'- -cCCGGcGCCGGGAcccccgggccgaACUCGGGCUcGGg -3'
miRNA:   3'- gaGGCCcCGGUCUU------------UGAGCUCGAaCC- -5'
31009 3' -55.6 NC_006560.1 + 39899 0.73 0.552258
Target:  5'- uCUCCGucguucGGGCCGGGGugcGCUCGGGUggcUGGg -3'
miRNA:   3'- -GAGGC------CCCGGUCUU---UGAGCUCGa--ACC- -5'
31009 3' -55.6 NC_006560.1 + 41276 0.67 0.880383
Target:  5'- gCUCa-GGGCCAGGAACgucCGGGCg--- -3'
miRNA:   3'- -GAGgcCCCGGUCUUUGa--GCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 42069 0.68 0.834306
Target:  5'- cCUCCGcGGG-CGGggGCUCGuGCa--- -3'
miRNA:   3'- -GAGGC-CCCgGUCuuUGAGCuCGaacc -5'
31009 3' -55.6 NC_006560.1 + 45834 0.69 0.799843
Target:  5'- -aCCGGGGUCGuGAGGC-CGAGCg--- -3'
miRNA:   3'- gaGGCCCCGGU-CUUUGaGCUCGaacc -5'
31009 3' -55.6 NC_006560.1 + 50261 0.66 0.906789
Target:  5'- cCUCCGGgcGGCCGG--GCUCGGcGCgcccccgGGg -3'
miRNA:   3'- -GAGGCC--CCGGUCuuUGAGCU-CGaa-----CC- -5'
31009 3' -55.6 NC_006560.1 + 50690 0.68 0.858259
Target:  5'- -gCCaGGGCCAGGAGCU--GGCcUGGc -3'
miRNA:   3'- gaGGcCCCGGUCUUUGAgcUCGaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.