miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3101 5' -64.6 NC_001493.1 + 66377 0.66 0.549123
Target:  5'- cCUCGCCCaccguCCCGGUGGUGaggCCCGGu -3'
miRNA:   3'- -GAGCGGGgu---GGGCUGCCGCag-GGGCU- -5'
3101 5' -64.6 NC_001493.1 + 29770 0.66 0.549123
Target:  5'- gUCGUCUCGCCCuuCaGCGUUCCCu- -3'
miRNA:   3'- gAGCGGGGUGGGcuGcCGCAGGGGcu -5'
3101 5' -64.6 NC_001493.1 + 56790 0.66 0.549123
Target:  5'- uUCGCgCCCGCCUcgGGCGGauCGgugCCCaCGAg -3'
miRNA:   3'- gAGCG-GGGUGGG--CUGCC--GCa--GGG-GCU- -5'
3101 5' -64.6 NC_001493.1 + 129044 0.66 0.539751
Target:  5'- -aCGUCCCGCCgagcacCGcACGGCccgcaguUCCCCGAg -3'
miRNA:   3'- gaGCGGGGUGG------GC-UGCCGc------AGGGGCU- -5'
3101 5' -64.6 NC_001493.1 + 128773 0.66 0.530434
Target:  5'- -gUGCCacgauCACCCaGAgGGCGaCCCCGGc -3'
miRNA:   3'- gaGCGGg----GUGGG-CUgCCGCaGGGGCU- -5'
3101 5' -64.6 NC_001493.1 + 13219 0.66 0.530434
Target:  5'- -gUGCCacgauCACCCaGAgGGCGaCCCCGGc -3'
miRNA:   3'- gaGCGGg----GUGGG-CUgCCGCaGGGGCU- -5'
3101 5' -64.6 NC_001493.1 + 82164 0.66 0.530434
Target:  5'- aCUCGguCUCCAUUCgggaGACGGCGUCCgaaCCGAu -3'
miRNA:   3'- -GAGC--GGGGUGGG----CUGCCGCAGG---GGCU- -5'
3101 5' -64.6 NC_001493.1 + 174 0.66 0.521177
Target:  5'- --gGCCCCGCCCccuuUGGCGagaCCCCa- -3'
miRNA:   3'- gagCGGGGUGGGcu--GCCGCa--GGGGcu -5'
3101 5' -64.6 NC_001493.1 + 115728 0.66 0.521177
Target:  5'- --gGCCCCGCCCccuuUGGCGagaCCCCa- -3'
miRNA:   3'- gagCGGGGUGGGcu--GCCGCa--GGGGcu -5'
3101 5' -64.6 NC_001493.1 + 15356 0.66 0.520255
Target:  5'- -gUGCCCCAguagUCCGucguagcGgGGCGUCCCgGAg -3'
miRNA:   3'- gaGCGGGGU----GGGC-------UgCCGCAGGGgCU- -5'
3101 5' -64.6 NC_001493.1 + 130910 0.66 0.520255
Target:  5'- -gUGCCCCAguagUCCGucguagcGgGGCGUCCCgGAg -3'
miRNA:   3'- gaGCGGGGU----GGGC-------UgCCGCAGGGgCU- -5'
3101 5' -64.6 NC_001493.1 + 30538 0.66 0.511983
Target:  5'- -aCGCCCCGUCCG-CGGuCGggaCCCUGGg -3'
miRNA:   3'- gaGCGGGGUGGGCuGCC-GCa--GGGGCU- -5'
3101 5' -64.6 NC_001493.1 + 48043 0.66 0.511983
Target:  5'- --gGUUCaCGCCCGAgaccaagacuaCGGCGUCCCCc- -3'
miRNA:   3'- gagCGGG-GUGGGCU-----------GCCGCAGGGGcu -5'
3101 5' -64.6 NC_001493.1 + 62775 0.66 0.502857
Target:  5'- -cCGUgaCCACCaCGACGGCGaagCCCgCGGg -3'
miRNA:   3'- gaGCGg-GGUGG-GCUGCCGCa--GGG-GCU- -5'
3101 5' -64.6 NC_001493.1 + 62733 0.66 0.502857
Target:  5'- -cCGUgaCCACCaCGACGGCGaagCCCgCGGg -3'
miRNA:   3'- gaGCGg-GGUGG-GCUGCCGCa--GGG-GCU- -5'
3101 5' -64.6 NC_001493.1 + 62649 0.66 0.502857
Target:  5'- -cCGUgaCCACCaCGACGGCGaagCCCgCGGg -3'
miRNA:   3'- gaGCGg-GGUGG-GCUGCCGCa--GGG-GCU- -5'
3101 5' -64.6 NC_001493.1 + 62859 0.66 0.502857
Target:  5'- -cCGUgaCCACCaCGACGGCGaagCCCaCGGg -3'
miRNA:   3'- gaGCGg-GGUGG-GCUGCCGCa--GGG-GCU- -5'
3101 5' -64.6 NC_001493.1 + 63105 0.66 0.502857
Target:  5'- -cCGUgaCCACCaCGACGGCGaagCCCaCGGg -3'
miRNA:   3'- gaGCGg-GGUGG-GCUGCCGCa--GGG-GCU- -5'
3101 5' -64.6 NC_001493.1 + 63027 0.66 0.502857
Target:  5'- -cCGUgaCCACCaCGACGGCGaagCCCaCGGg -3'
miRNA:   3'- gaGCGg-GGUGG-GCUGCCGCa--GGG-GCU- -5'
3101 5' -64.6 NC_001493.1 + 62943 0.66 0.502857
Target:  5'- -cCGUgaCCACCaCGACGGCGaagCCCaCGGg -3'
miRNA:   3'- gaGCGg-GGUGG-GCUGCCGCa--GGG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.