miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 3' -54.8 NC_006560.1 + 107876 0.66 0.956021
Target:  5'- aGGUCacgCCCgucaGGCG-GG-CGACCCg -3'
miRNA:   3'- -CCAGagaGGGaa--CUGCaCCaGCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 143370 0.66 0.948009
Target:  5'- cGGUCUCgaCCCa-GGCGUaccgggGGgcggCGGCCCu -3'
miRNA:   3'- -CCAGAGa-GGGaaCUGCA------CCa---GCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 10568 0.66 0.948009
Target:  5'- cGGUCUCcagcaccugCCCgggGGgGUGGagggaGACCCa -3'
miRNA:   3'- -CCAGAGa--------GGGaa-CUgCACCag---CUGGG- -5'
31010 3' -54.8 NC_006560.1 + 63213 0.66 0.945428
Target:  5'- cGGUUgagCUCCCggaacuccucggaGGCGaGGUCGAgCCCc -3'
miRNA:   3'- -CCAGa--GAGGGaa-----------CUGCaCCAGCU-GGG- -5'
31010 3' -54.8 NC_006560.1 + 73264 0.66 0.943662
Target:  5'- uGGcCUCcacgcgcaugaCCCUcgccGACGUGG-CGGCCCa -3'
miRNA:   3'- -CCaGAGa----------GGGAa---CUGCACCaGCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 122554 0.67 0.939085
Target:  5'- cGGgUUCUCgCggUGGCGacugagccGGUCGGCCCg -3'
miRNA:   3'- -CCaGAGAGgGa-ACUGCa-------CCAGCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 32656 0.67 0.934275
Target:  5'- aGGcCg--CCCggcGGCGgcacggGGUCGGCCCa -3'
miRNA:   3'- -CCaGagaGGGaa-CUGCa-----CCAGCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 101466 0.68 0.9127
Target:  5'- uGUCgccgCUCCggacGGCGUcgcGGUCGGCCCc -3'
miRNA:   3'- cCAGa---GAGGgaa-CUGCA---CCAGCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 105080 0.68 0.9127
Target:  5'- gGGUCUCgccgUCCUc-GCGgGGcCGGCCCg -3'
miRNA:   3'- -CCAGAGa---GGGAacUGCaCCaGCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 45915 0.68 0.9127
Target:  5'- gGGUCUC-CCCgggGGCGaGGacgaCGGCCUg -3'
miRNA:   3'- -CCAGAGaGGGaa-CUGCaCCa---GCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 56649 0.68 0.894083
Target:  5'- ---gUCUCCCggGugG-GG-CGACCCa -3'
miRNA:   3'- ccagAGAGGGaaCugCaCCaGCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 118628 0.69 0.85863
Target:  5'- uGGUCUCguacgagaaCUCggUGGCGUGGggCGGCCg -3'
miRNA:   3'- -CCAGAGa--------GGGa-ACUGCACCa-GCUGGg -5'
31010 3' -54.8 NC_006560.1 + 145517 0.71 0.754866
Target:  5'- --gCUCUCCCg-GGCG-GGccUCGACCCg -3'
miRNA:   3'- ccaGAGAGGGaaCUGCaCC--AGCUGGG- -5'
31010 3' -54.8 NC_006560.1 + 120871 1.15 0.002004
Target:  5'- uGGUCUCUCCCUUGACGUGGUCGACCCg -3'
miRNA:   3'- -CCAGAGAGGGAACUGCACCAGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.