miRNA display CGI


Results 41 - 60 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31010 5' -61.6 NC_006560.1 + 44916 0.66 0.686285
Target:  5'- gCGAACCccGCCCCG-AGGCAacGGCc-- -3'
miRNA:   3'- gGCUUGGu-CGGGGCgUCCGU--CCGcag -5'
31010 5' -61.6 NC_006560.1 + 58293 0.66 0.686285
Target:  5'- uCCGG---GGCCUucuUGCGGGCGGGCG-Cg -3'
miRNA:   3'- -GGCUuggUCGGG---GCGUCCGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 149750 0.66 0.686285
Target:  5'- aCGAccACCGacCCCCGgGGcGCggGGGCGUCg -3'
miRNA:   3'- gGCU--UGGUc-GGGGCgUC-CG--UCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 46088 0.66 0.686285
Target:  5'- cCCGAGgCGGCgCCGCccGCGGGgG-Ca -3'
miRNA:   3'- -GGCUUgGUCGgGGCGucCGUCCgCaG- -5'
31010 5' -61.6 NC_006560.1 + 84783 0.66 0.686285
Target:  5'- aCCGcGCCuuucuGGCCUCGCuGGCugugcuGGCGg- -3'
miRNA:   3'- -GGCuUGG-----UCGGGGCGuCCGu-----CCGCag -5'
31010 5' -61.6 NC_006560.1 + 54845 0.66 0.676512
Target:  5'- gCGAgcaGCCAcGCCgCCGCcGGgAGGCGcCc -3'
miRNA:   3'- gGCU---UGGU-CGG-GGCGuCCgUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 142750 0.66 0.676512
Target:  5'- cCCGGcGCCcgGGCCCCGgGGGCgcgGGaGCGg- -3'
miRNA:   3'- -GGCU-UGG--UCGGGGCgUCCG---UC-CGCag -5'
31010 5' -61.6 NC_006560.1 + 54110 0.66 0.666706
Target:  5'- cCCGAaccuACCGGCgCaCCGCcccAGaGCGGGCGcCc -3'
miRNA:   3'- -GGCU----UGGUCG-G-GGCG---UC-CGUCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 434 0.66 0.666706
Target:  5'- cCCGGccuCCgcGGCCuCCGCGgccuccccGGCGGGCGg- -3'
miRNA:   3'- -GGCUu--GG--UCGG-GGCGU--------CCGUCCGCag -5'
31010 5' -61.6 NC_006560.1 + 132919 0.66 0.673574
Target:  5'- gCCGAcggcgGCCAGCCaCGCcgagaucuucacgaAGGCcgAGGCGgUCg -3'
miRNA:   3'- -GGCU-----UGGUCGGgGCG--------------UCCG--UCCGC-AG- -5'
31010 5' -61.6 NC_006560.1 + 109258 0.66 0.676512
Target:  5'- -aGAACaCGacGCCCCGguGGUgcgcggucgAGGCGUa -3'
miRNA:   3'- ggCUUG-GU--CGGGGCguCCG---------UCCGCAg -5'
31010 5' -61.6 NC_006560.1 + 15887 0.66 0.676512
Target:  5'- gCCGGcgACCGGCgCCaGCAGcG-AGGCGUUc -3'
miRNA:   3'- -GGCU--UGGUCGgGG-CGUC-CgUCCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 53540 0.66 0.676512
Target:  5'- uCCGGGCCcGCCCCggcuccacgcccGCGuGCGcGCGUCg -3'
miRNA:   3'- -GGCUUGGuCGGGG------------CGUcCGUcCGCAG- -5'
31010 5' -61.6 NC_006560.1 + 54464 0.66 0.676512
Target:  5'- aCGAACCc-CCCCGCGucGCGGGgGUg -3'
miRNA:   3'- gGCUUGGucGGGGCGUc-CGUCCgCAg -5'
31010 5' -61.6 NC_006560.1 + 62146 0.66 0.676512
Target:  5'- cCCGAGa-GGCCCCcCAGGUucucggucaccAGGuCGUCg -3'
miRNA:   3'- -GGCUUggUCGGGGcGUCCG-----------UCC-GCAG- -5'
31010 5' -61.6 NC_006560.1 + 86546 0.66 0.676512
Target:  5'- gCGAGCCAGUCgCGCAG-CAGGaugCu -3'
miRNA:   3'- gGCUUGGUCGGgGCGUCcGUCCgcaG- -5'
31010 5' -61.6 NC_006560.1 + 99433 0.66 0.676512
Target:  5'- cCCG-ACCAGCgCCGCGauGGUuucguucgccccGGGCGcCg -3'
miRNA:   3'- -GGCuUGGUCGgGGCGU--CCG------------UCCGCaG- -5'
31010 5' -61.6 NC_006560.1 + 103351 0.66 0.676512
Target:  5'- aCGAGCUucacggAGUCCCGCAGcugacuCAGGCccGUCg -3'
miRNA:   3'- gGCUUGG------UCGGGGCGUCc-----GUCCG--CAG- -5'
31010 5' -61.6 NC_006560.1 + 112262 0.66 0.676512
Target:  5'- gCCGGcucgcccacgGCC-GCCuCCGCuGGguGGCGg- -3'
miRNA:   3'- -GGCU----------UGGuCGG-GGCGuCCguCCGCag -5'
31010 5' -61.6 NC_006560.1 + 119524 0.66 0.676512
Target:  5'- gCgGGGCCGcgcgcuaagcgcGCCCCGCGGGacccccauggcCGGGCG-Cg -3'
miRNA:   3'- -GgCUUGGU------------CGGGGCGUCC-----------GUCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.