miRNA display CGI


Results 21 - 40 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31011 3' -63.9 NC_006560.1 + 99846 0.66 0.612616
Target:  5'- cGGGAUccagaGGUagcucCCGUCGCCGGGGgGc -3'
miRNA:   3'- -CCCUGag---CCGgc---GGCAGCGGCUCCgC- -5'
31011 3' -63.9 NC_006560.1 + 139044 0.66 0.612616
Target:  5'- gGGGGCUcgcgguguccCGGCCcguGCCGg-GCCcgGGGGCGc -3'
miRNA:   3'- -CCCUGA----------GCCGG---CGGCagCGG--CUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 142086 0.66 0.612616
Target:  5'- cGGGCggGGCCGCgG-CGCgGAGGa- -3'
miRNA:   3'- cCCUGagCCGGCGgCaGCGgCUCCgc -5'
31011 3' -63.9 NC_006560.1 + 106356 0.66 0.61166
Target:  5'- cGGGCUCGGacuuuguCCGCgCGcCGCUGuGGGCc -3'
miRNA:   3'- cCCUGAGCC-------GGCG-GCaGCGGC-UCCGc -5'
31011 3' -63.9 NC_006560.1 + 54670 0.66 0.61166
Target:  5'- gGGGGCgcggCaGCCGCCGgccgCGCCcucguaguccgugGGGGuCGg -3'
miRNA:   3'- -CCCUGa---GcCGGCGGCa---GCGG-------------CUCC-GC- -5'
31011 3' -63.9 NC_006560.1 + 101523 0.66 0.609749
Target:  5'- cGGACggcaCGGCCcccgggaugagcauGCCcagcugcaggcgGUUGUCGAGGCGg -3'
miRNA:   3'- cCCUGa---GCCGG--------------CGG------------CAGCGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 24114 0.66 0.603065
Target:  5'- cGGcGGCUgGcGCCGCgCGcCGCCcGGGCc -3'
miRNA:   3'- -CC-CUGAgC-CGGCG-GCaGCGGcUCCGc -5'
31011 3' -63.9 NC_006560.1 + 24861 0.66 0.603065
Target:  5'- cGGGCcCGGCCucuucGCgCG-CGUCGAGGCc -3'
miRNA:   3'- cCCUGaGCCGG-----CG-GCaGCGGCUCCGc -5'
31011 3' -63.9 NC_006560.1 + 31781 0.66 0.603065
Target:  5'- uGGACUCGcGCCacccCUGgaccccCGCCGAgGGCGa -3'
miRNA:   3'- cCCUGAGC-CGGc---GGCa-----GCGGCU-CCGC- -5'
31011 3' -63.9 NC_006560.1 + 73880 0.66 0.603065
Target:  5'- gGGGACgcccgcgacCGGCgGUaccaCGUCGCCucGGCGc -3'
miRNA:   3'- -CCCUGa--------GCCGgCG----GCAGCGGcuCCGC- -5'
31011 3' -63.9 NC_006560.1 + 79815 0.66 0.603065
Target:  5'- gGGGGCgCGGUggCGCCGggCGgCGAuuucGGCGg -3'
miRNA:   3'- -CCCUGaGCCG--GCGGCa-GCgGCU----CCGC- -5'
31011 3' -63.9 NC_006560.1 + 106500 0.66 0.603065
Target:  5'- --cGCUCGacgaCC-CCGcCGCCGAGGCGg -3'
miRNA:   3'- cccUGAGCc---GGcGGCaGCGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 131121 0.66 0.603065
Target:  5'- gGGGGCcUGGcCCGCg---GCCGGGGCGc -3'
miRNA:   3'- -CCCUGaGCC-GGCGgcagCGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 22420 0.66 0.603065
Target:  5'- cGGACUCGGaCC-CCGgCuCgGAGGCGu -3'
miRNA:   3'- cCCUGAGCC-GGcGGCaGcGgCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 35416 0.66 0.603065
Target:  5'- -cGGCcgCGcccGCCGCCuuuuaucccgGUUGCCGGGGCGa -3'
miRNA:   3'- ccCUGa-GC---CGGCGG----------CAGCGGCUCCGC- -5'
31011 3' -63.9 NC_006560.1 + 75262 0.66 0.603065
Target:  5'- gGGGAgUUcggggGGCUGCUGcaCGCCGAGGg- -3'
miRNA:   3'- -CCCUgAG-----CCGGCGGCa-GCGGCUCCgc -5'
31011 3' -63.9 NC_006560.1 + 15960 0.66 0.593533
Target:  5'- uGGGAgUaCGGCCGCaCGU-GCCcggagaGGGCGc -3'
miRNA:   3'- -CCCUgA-GCCGGCG-GCAgCGGc-----UCCGC- -5'
31011 3' -63.9 NC_006560.1 + 31118 0.66 0.593533
Target:  5'- cGGcCUCGGgCGCCGggggCGCCuccGGCu -3'
miRNA:   3'- cCCuGAGCCgGCGGCa---GCGGcu-CCGc -5'
31011 3' -63.9 NC_006560.1 + 144748 0.66 0.593533
Target:  5'- --cGC-CGGCCuucCCGUCGCCGccGGCGg -3'
miRNA:   3'- cccUGaGCCGGc--GGCAGCGGCu-CCGC- -5'
31011 3' -63.9 NC_006560.1 + 111988 0.66 0.593533
Target:  5'- gGGGACcUGGUCcCCG-CGCCG-GGCc -3'
miRNA:   3'- -CCCUGaGCCGGcGGCaGCGGCuCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.