miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31011 5' -57.6 NC_006560.1 + 131747 0.66 0.815095
Target:  5'- -gCACgCCGUGC-UGUGGaGCCA-GAc -3'
miRNA:   3'- caGUGgGGCACGuACACC-CGGUuCUa -5'
31011 5' -57.6 NC_006560.1 + 126911 0.66 0.806266
Target:  5'- --gGCCCCacgacGCGgugGUGGGCCGGGGc -3'
miRNA:   3'- cagUGGGGca---CGUa--CACCCGGUUCUa -5'
31011 5' -57.6 NC_006560.1 + 77848 0.67 0.759897
Target:  5'- cUCAcgcuCCCCGcgGCGUGggagacggGGGCCGGGGc -3'
miRNA:   3'- cAGU----GGGGCa-CGUACa-------CCCGGUUCUa -5'
31011 5' -57.6 NC_006560.1 + 107951 0.68 0.720682
Target:  5'- -aCGCCCCGacgaagGUGgcGUGGGCCGGGGa -3'
miRNA:   3'- caGUGGGGCa-----CGUa-CACCCGGUUCUa -5'
31011 5' -57.6 NC_006560.1 + 56404 0.68 0.710662
Target:  5'- gGUUGCCCCGcGCg---GGGCCGGGGa -3'
miRNA:   3'- -CAGUGGGGCaCGuacaCCCGGUUCUa -5'
31011 5' -57.6 NC_006560.1 + 43761 0.68 0.700575
Target:  5'- -gCGCCCCGUGCGc--GGGCCGGc-- -3'
miRNA:   3'- caGUGGGGCACGUacaCCCGGUUcua -5'
31011 5' -57.6 NC_006560.1 + 31359 0.68 0.680234
Target:  5'- -cCGCCCCGccgaGCGg--GGGCCGAGGa -3'
miRNA:   3'- caGUGGGGCa---CGUacaCCCGGUUCUa -5'
31011 5' -57.6 NC_006560.1 + 69142 0.68 0.680234
Target:  5'- cUCGCCCUGcUGCAccagacGUGGGCCcuGAUc -3'
miRNA:   3'- cAGUGGGGC-ACGUa-----CACCCGGuuCUA- -5'
31011 5' -57.6 NC_006560.1 + 72039 0.7 0.5877
Target:  5'- -gCACCCCGagGCGcgGUGGGCgGGGGc -3'
miRNA:   3'- caGUGGGGCa-CGUa-CACCCGgUUCUa -5'
31011 5' -57.6 NC_006560.1 + 23746 0.72 0.459626
Target:  5'- cGUCGCCgCCGUGCGcgccGUGGGCCu---- -3'
miRNA:   3'- -CAGUGG-GGCACGUa---CACCCGGuucua -5'
31011 5' -57.6 NC_006560.1 + 120357 1.06 0.002531
Target:  5'- cGUCACCCCGUGCAUGUGGGCCAAGAUg -3'
miRNA:   3'- -CAGUGGGGCACGUACACCCGGUUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.