miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31012 3' -64.4 NC_006560.1 + 130973 0.66 0.565466
Target:  5'- uCGCCuUCC-UGgGGCCCgaguucgagccCCGGGGGg -3'
miRNA:   3'- cGCGGuAGGcGCgCCGGGa----------GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 188 0.66 0.565466
Target:  5'- cCGCCGgcguuuuuuUCCGCGCGcGCgCCgCCGcGGGa -3'
miRNA:   3'- cGCGGU---------AGGCGCGC-CG-GGaGGUcCCC- -5'
31012 3' -64.4 NC_006560.1 + 21608 0.66 0.565466
Target:  5'- cGCGCC-UgCGCGCGGCgCCgCCGGc-- -3'
miRNA:   3'- -CGCGGuAgGCGCGCCG-GGaGGUCccc -5'
31012 3' -64.4 NC_006560.1 + 100262 0.66 0.565466
Target:  5'- gGCGCaggAUCuCGCGCGaGUCUgccgCCAGGuGGc -3'
miRNA:   3'- -CGCGg--UAG-GCGCGC-CGGGa---GGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 150517 0.66 0.565466
Target:  5'- cCGCCGgcguuuuuuUCCGCGCGcGCgCCgCCGcGGGa -3'
miRNA:   3'- cGCGGU---------AGGCGCGC-CG-GGaGGUcCCC- -5'
31012 3' -64.4 NC_006560.1 + 14302 0.66 0.564521
Target:  5'- gGCGCCggggaggagguugGUCaccaGCGCGGCCgC-CCAGGc- -3'
miRNA:   3'- -CGCGG-------------UAGg---CGCGCCGG-GaGGUCCcc -5'
31012 3' -64.4 NC_006560.1 + 39448 0.66 0.564521
Target:  5'- aGCGCCAcggcgCUGCGCGGUCggcgCCGccggcgcggcgacGGGGc -3'
miRNA:   3'- -CGCGGUa----GGCGCGCCGGga--GGU-------------CCCC- -5'
31012 3' -64.4 NC_006560.1 + 148401 0.66 0.556033
Target:  5'- -aGCgGggaCGCGgGGCgCUCCGGGcGGg -3'
miRNA:   3'- cgCGgUag-GCGCgCCGgGAGGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 83668 0.66 0.556033
Target:  5'- cGCGCagagcgCgGCGCGGggCUCCGGGGc -3'
miRNA:   3'- -CGCGgua---GgCGCGCCggGAGGUCCCc -5'
31012 3' -64.4 NC_006560.1 + 12782 0.66 0.556033
Target:  5'- uGgGCCGagaCCGCGgGGagggaCCCgucggCCGGGGGc -3'
miRNA:   3'- -CgCGGUa--GGCGCgCC-----GGGa----GGUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 13761 0.66 0.556033
Target:  5'- gGCGCCGUucgcaaaaaUCGCGCGccggcucgaucGCCCUCgGuguucGGGGc -3'
miRNA:   3'- -CGCGGUA---------GGCGCGC-----------CGGGAGgU-----CCCC- -5'
31012 3' -64.4 NC_006560.1 + 78508 0.66 0.556033
Target:  5'- gGCGCgG-CCGaCGCcGCCCUgCGGGaGGu -3'
miRNA:   3'- -CGCGgUaGGC-GCGcCGGGAgGUCC-CC- -5'
31012 3' -64.4 NC_006560.1 + 118060 0.66 0.556033
Target:  5'- gGCGCCG-CCGCGgGcGCCCccgccgagcUCgCGGcGGGc -3'
miRNA:   3'- -CGCGGUaGGCGCgC-CGGG---------AG-GUC-CCC- -5'
31012 3' -64.4 NC_006560.1 + 147004 0.66 0.556033
Target:  5'- uCGCgG-CCGCGgGGCCaccggggCCAcGGGGg -3'
miRNA:   3'- cGCGgUaGGCGCgCCGGga-----GGU-CCCC- -5'
31012 3' -64.4 NC_006560.1 + 5771 0.66 0.556033
Target:  5'- gGCGCCG--CGCGCaGGCgCggaagCAGGGGg -3'
miRNA:   3'- -CGCGGUagGCGCG-CCGgGag---GUCCCC- -5'
31012 3' -64.4 NC_006560.1 + 10316 0.66 0.556033
Target:  5'- cCGCCG-CCGCgacccGCGGCCCgacggUCAGGa- -3'
miRNA:   3'- cGCGGUaGGCG-----CGCCGGGa----GGUCCcc -5'
31012 3' -64.4 NC_006560.1 + 79501 0.66 0.556033
Target:  5'- cGCGCCG-CCGCGCcgcccGGCCCaCCGucGGc -3'
miRNA:   3'- -CGCGGUaGGCGCG-----CCGGGaGGUccCC- -5'
31012 3' -64.4 NC_006560.1 + 148649 0.66 0.556033
Target:  5'- cCGCCggCCGgagaCGCGGCCCaaauaCGGGGc -3'
miRNA:   3'- cGCGGuaGGC----GCGCCGGGag---GUCCCc -5'
31012 3' -64.4 NC_006560.1 + 71734 0.66 0.555093
Target:  5'- --cCCGUCgggGCGCGGCCugcgcugcguguuCUCCAGGGu -3'
miRNA:   3'- cgcGGUAGg--CGCGCCGG-------------GAGGUCCCc -5'
31012 3' -64.4 NC_006560.1 + 144870 0.66 0.550396
Target:  5'- cCGCCGcCCGCGUGGCCCugagcgcccauguucUCCccGGc -3'
miRNA:   3'- cGCGGUaGGCGCGCCGGG---------------AGGucCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.