Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31012 | 5' | -57.9 | NC_006560.1 | + | 118940 | 1.03 | 0.003999 |
Target: 5'- cAUCACCCAGCGCGUGCGCUACGAGUUc -3' miRNA: 3'- -UAGUGGGUCGCGCACGCGAUGCUCAA- -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 125088 | 0.77 | 0.236404 |
Target: 5'- gAUCGCCCGGCccgGCGUGCGCUAcuucgcccCGGGUc -3' miRNA: 3'- -UAGUGGGUCG---CGCACGCGAU--------GCUCAa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 22902 | 0.73 | 0.368524 |
Target: 5'- -gCGCCCgagguggcggaGGCGCGccgGCGCUACGAGg- -3' miRNA: 3'- uaGUGGG-----------UCGCGCa--CGCGAUGCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 115061 | 0.72 | 0.446657 |
Target: 5'- -aCGCCgCGGCGCugcaGCGCUGCGAGg- -3' miRNA: 3'- uaGUGG-GUCGCGca--CGCGAUGCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 105848 | 0.71 | 0.493849 |
Target: 5'- -gCGCUCGuGCGCGcGCGCUACGGGc- -3' miRNA: 3'- uaGUGGGU-CGCGCaCGCGAUGCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 2255 | 0.71 | 0.51336 |
Target: 5'- ---cCCCAGCGCGcgcagGCGCggUGCGAGUg -3' miRNA: 3'- uaguGGGUCGCGCa----CGCG--AUGCUCAa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 86320 | 0.7 | 0.533179 |
Target: 5'- gGUCGCCCAGCGCGcGUGC-ACGu--- -3' miRNA: 3'- -UAGUGGGUCGCGCaCGCGaUGCucaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 2412 | 0.7 | 0.573571 |
Target: 5'- uGUCggGCCCcaGGCGCGUGCGC-ACGcGGUa -3' miRNA: 3'- -UAG--UGGG--UCGCGCACGCGaUGC-UCAa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 85248 | 0.69 | 0.58379 |
Target: 5'- -gCGCCCgcGGCGCGgaagccgGCGCUGCgGAGg- -3' miRNA: 3'- uaGUGGG--UCGCGCa------CGCGAUG-CUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 71731 | 0.69 | 0.58379 |
Target: 5'- -gUACCCgucggGGCGCGgccUGCGCUGCGuGUUc -3' miRNA: 3'- uaGUGGG-----UCGCGC---ACGCGAUGCuCAA- -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 55185 | 0.69 | 0.594045 |
Target: 5'- -aCGCCCGGCGCGgacccgGCGCcuccucuCGAGg- -3' miRNA: 3'- uaGUGGGUCGCGCa-----CGCGau-----GCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 135977 | 0.69 | 0.594045 |
Target: 5'- cAUCACCCGGCGCGcggugGCgGCcggggGCGGGa- -3' miRNA: 3'- -UAGUGGGUCGCGCa----CG-CGa----UGCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 128790 | 0.69 | 0.604328 |
Target: 5'- cUCugCCGGCGCuucaagggGCGCUGCGAc-- -3' miRNA: 3'- uAGugGGUCGCGca------CGCGAUGCUcaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 26094 | 0.68 | 0.645594 |
Target: 5'- --gGCCCGGCGCGgcggGgGCUucGCGGGg- -3' miRNA: 3'- uagUGGGUCGCGCa---CgCGA--UGCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 72892 | 0.68 | 0.655904 |
Target: 5'- -cCACCCggaaGGCGCuGgacGCGCUGCGGGa- -3' miRNA: 3'- uaGUGGG----UCGCG-Ca--CGCGAUGCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 117833 | 0.68 | 0.666195 |
Target: 5'- -cCGCCCuGCGCGUGaGCUGgGGGc- -3' miRNA: 3'- uaGUGGGuCGCGCACgCGAUgCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 82785 | 0.68 | 0.676457 |
Target: 5'- -gCGCCCGcGCGCGgGCGC-GCGGGa- -3' miRNA: 3'- uaGUGGGU-CGCGCaCGCGaUGCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 85507 | 0.68 | 0.686683 |
Target: 5'- gGUCGCCgGGCugcugcccGCGgggGCGCUugGGGg- -3' miRNA: 3'- -UAGUGGgUCG--------CGCa--CGCGAugCUCaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 22842 | 0.68 | 0.696862 |
Target: 5'- -cCGCCCccggGGCGCGUGCuCUACGGc-- -3' miRNA: 3'- uaGUGGG----UCGCGCACGcGAUGCUcaa -5' |
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31012 | 5' | -57.9 | NC_006560.1 | + | 2056 | 0.67 | 0.727033 |
Target: 5'- --gGCCCAGCGCacgcgcgGCGCggcgGCGGGg- -3' miRNA: 3'- uagUGGGUCGCGca-----CGCGa---UGCUCaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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