miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31013 3' -54.3 NC_006560.1 + 18437 0.69 0.865096
Target:  5'- cGCCgcggCCGg--CGgagUCUUCCCcgaggacGCCCCg -3'
miRNA:   3'- -CGGa---GGCacaGCaa-AGAAGGG-------UGGGG- -5'
31013 3' -54.3 NC_006560.1 + 17526 0.69 0.85047
Target:  5'- cGCCgCCGUcGUCGUcg---UCCGCCCCc -3'
miRNA:   3'- -CGGaGGCA-CAGCAaagaaGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 27427 0.69 0.85047
Target:  5'- gGCCUCCGg--CGUUUCgcgUCCgCGuccUCCCg -3'
miRNA:   3'- -CGGAGGCacaGCAAAGa--AGG-GU---GGGG- -5'
31013 3' -54.3 NC_006560.1 + 89385 0.7 0.834306
Target:  5'- aUCUCCG-GUCcg--CUcCCCGCCCCg -3'
miRNA:   3'- cGGAGGCaCAGcaaaGAaGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 15128 0.7 0.834306
Target:  5'- gGUCUUCGUGgucgCGggcUCUgggcccCCCGCCCCc -3'
miRNA:   3'- -CGGAGGCACa---GCaa-AGAa-----GGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 8418 0.7 0.817409
Target:  5'- cGCaC-CUGUGUuuUGUuuUUCUUCCCAUCCCc -3'
miRNA:   3'- -CG-GaGGCACA--GCA--AAGAAGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 145116 0.7 0.817409
Target:  5'- cGCCccCCGUGUCccugcggggGgcUCUggccCCCGCCCCc -3'
miRNA:   3'- -CGGa-GGCACAG---------CaaAGAa---GGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 86847 0.7 0.817409
Target:  5'- cGCCgcgCCGUcggcGUCGUccccgUCcucCCCGCCCCc -3'
miRNA:   3'- -CGGa--GGCA----CAGCAa----AGaa-GGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 124614 0.71 0.781672
Target:  5'- gGCC-CCGgggGcCGUg-CUUCUCGCCCCg -3'
miRNA:   3'- -CGGaGGCa--CaGCAaaGAAGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 17585 0.71 0.772382
Target:  5'- uCgUCCGUGUCGUcc---UCCGCCCCg -3'
miRNA:   3'- cGgAGGCACAGCAaagaaGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 27551 0.71 0.762968
Target:  5'- gGCCuUCCGUGUCGcg-CgcgCCCGCCg- -3'
miRNA:   3'- -CGG-AGGCACAGCaaaGaa-GGGUGGgg -5'
31013 3' -54.3 NC_006560.1 + 27953 0.71 0.762968
Target:  5'- cGCC-CCGgggGUCGguggUCgUUCCCGCCUg -3'
miRNA:   3'- -CGGaGGCa--CAGCaa--AG-AAGGGUGGGg -5'
31013 3' -54.3 NC_006560.1 + 28732 0.72 0.737971
Target:  5'- cGCCgCCGguugGUCGcgccaccgcgUCCCGCCCCg -3'
miRNA:   3'- -CGGaGGCa---CAGCaaaga-----AGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 44412 0.72 0.734066
Target:  5'- cGUCUCCGcgaggcccugacUGUCGUcaacgcgCUgcugCCCGCCCCc -3'
miRNA:   3'- -CGGAGGC------------ACAGCAaa-----GAa---GGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 45043 0.72 0.704372
Target:  5'- cGUCUCUgucguGUGUCGUUcgUCcUCCCGuCCCCc -3'
miRNA:   3'- -CGGAGG-----CACAGCAA--AGaAGGGU-GGGG- -5'
31013 3' -54.3 NC_006560.1 + 95717 0.73 0.698359
Target:  5'- cGCCUCCGUGUaccggugcggggaaGUggagCUgCgCCGCCCCg -3'
miRNA:   3'- -CGGAGGCACAg-------------CAaa--GAaG-GGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 15198 0.73 0.663969
Target:  5'- cCCUCCGgcgGggCGggacUCgUUCCCGCCCCg -3'
miRNA:   3'- cGGAGGCa--Ca-GCaa--AG-AAGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 132405 0.74 0.613968
Target:  5'- aGUCUCCGUuUCGUccgUCgcggccgucgaucucUCCCACCCCu -3'
miRNA:   3'- -CGGAGGCAcAGCAa--AGa--------------AGGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 109788 0.76 0.529438
Target:  5'- gGCCUCgaagggcgaacgcgUGUGUCGggUCccaccCCCACCCCg -3'
miRNA:   3'- -CGGAG--------------GCACAGCaaAGaa---GGGUGGGG- -5'
31013 3' -54.3 NC_006560.1 + 116004 1.13 0.002491
Target:  5'- cGCCUCCGUGUCGUUUCUUCCCACCCCc -3'
miRNA:   3'- -CGGAGGCACAGCAAAGAAGGGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.