miRNA display CGI


Results 21 - 40 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31013 5' -55 NC_006560.1 + 135990 0.66 0.935204
Target:  5'- gCGGuGGCgGcCGGggGCGGgacCGAGGa -3'
miRNA:   3'- -GCC-CCGgCuGUCuuUGUCagaGCUCC- -5'
31013 5' -55 NC_006560.1 + 139245 0.66 0.934713
Target:  5'- uCGGGGuCCGGCGcccGGAcccccgggggcgcGCGGUCgucggcgCGGGGg -3'
miRNA:   3'- -GCCCC-GGCUGU---CUU-------------UGUCAGa------GCUCC- -5'
31013 5' -55 NC_006560.1 + 62454 0.66 0.933724
Target:  5'- gCGGGGCCGcggcgcgggcgcucACAGGAcGCAG-CUggugcagaCGAGGu -3'
miRNA:   3'- -GCCCCGGC--------------UGUCUU-UGUCaGA--------GCUCC- -5'
31013 5' -55 NC_006560.1 + 13029 0.67 0.930187
Target:  5'- -cGGGCCG-CGGcgGCAGgccgUCGGGGg -3'
miRNA:   3'- gcCCCGGCuGUCuuUGUCag--AGCUCC- -5'
31013 5' -55 NC_006560.1 + 128160 0.67 0.930187
Target:  5'- cCGGGG-CGAaAGAAACguucacguGGUCgUCGGGGa -3'
miRNA:   3'- -GCCCCgGCUgUCUUUG--------UCAG-AGCUCC- -5'
31013 5' -55 NC_006560.1 + 85503 0.67 0.928636
Target:  5'- uCGGGGUCGccgggcugcugcccGCGGggGCg--CUUGGGGg -3'
miRNA:   3'- -GCCCCGGC--------------UGUCuuUGucaGAGCUCC- -5'
31013 5' -55 NC_006560.1 + 28956 0.67 0.924935
Target:  5'- uCGGGGCCGccccaacgggGCGGGGAUaugcugauGGgacgccgCUCGGGGc -3'
miRNA:   3'- -GCCCCGGC----------UGUCUUUG--------UCa------GAGCUCC- -5'
31013 5' -55 NC_006560.1 + 140522 0.67 0.922768
Target:  5'- gCGGGGCCGcuucaucgccgggcGCGGAGAgGGggCUccgaagcCGAGGu -3'
miRNA:   3'- -GCCCCGGC--------------UGUCUUUgUCa-GA-------GCUCC- -5'
31013 5' -55 NC_006560.1 + 17513 0.67 0.919447
Target:  5'- gCGGGGCCGGCGGcgccGCcGUCgUCGucGu -3'
miRNA:   3'- -GCCCCGGCUGUCuu--UGuCAG-AGCucC- -5'
31013 5' -55 NC_006560.1 + 33129 0.67 0.919447
Target:  5'- gCGGGGaaGGCGGGGAaGGcCggCGAGGg -3'
miRNA:   3'- -GCCCCggCUGUCUUUgUCaGa-GCUCC- -5'
31013 5' -55 NC_006560.1 + 32939 0.67 0.919447
Target:  5'- gGGGGCCGucgccgccgGCGGcGACGGgaaggCcggCGAGGg -3'
miRNA:   3'- gCCCCGGC---------UGUCuUUGUCa----Ga--GCUCC- -5'
31013 5' -55 NC_006560.1 + 28146 0.67 0.918321
Target:  5'- cCGGGGuCCGugGGuggucucgccuGCGGUCcUGGGGu -3'
miRNA:   3'- -GCCCC-GGCugUCuu---------UGUCAGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 28096 0.67 0.918321
Target:  5'- cCGGGGuCCGugGGuggucccgccuGCGGUCcUGGGGu -3'
miRNA:   3'- -GCCCC-GGCugUCuu---------UGUCAGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 5671 0.67 0.917755
Target:  5'- cCGGGGC--GCGGggGCGGcCggcggcgccgcccgUCGAGGa -3'
miRNA:   3'- -GCCCCGgcUGUCuuUGUCaG--------------AGCUCC- -5'
31013 5' -55 NC_006560.1 + 139516 0.67 0.913723
Target:  5'- aCGGGGCUGcggcgauaGCgAGGGACGGggggCGGGGg -3'
miRNA:   3'- -GCCCCGGC--------UG-UCUUUGUCaga-GCUCC- -5'
31013 5' -55 NC_006560.1 + 149818 0.67 0.913723
Target:  5'- aGGGGg-GGCGGAGGCGGcCUCGcGGc -3'
miRNA:   3'- gCCCCggCUGUCUUUGUCaGAGCuCC- -5'
31013 5' -55 NC_006560.1 + 32799 0.67 0.913723
Target:  5'- gGGGGCCGGgGGc-GCGG-C-CGGGGa -3'
miRNA:   3'- gCCCCGGCUgUCuuUGUCaGaGCUCC- -5'
31013 5' -55 NC_006560.1 + 54979 0.67 0.913723
Target:  5'- aCGGGcGUgGGCGGAGGCcucGGgcggaUCGAGGg -3'
miRNA:   3'- -GCCC-CGgCUGUCUUUG---UCag---AGCUCC- -5'
31013 5' -55 NC_006560.1 + 69584 0.67 0.913138
Target:  5'- gCGcGGGCCGGCccagcccgcuccgGGAGACGGUCcUGAucuGGa -3'
miRNA:   3'- -GC-CCCGGCUG-------------UCUUUGUCAGaGCU---CC- -5'
31013 5' -55 NC_006560.1 + 128324 0.67 0.911961
Target:  5'- cCGGGGCCGGgacguucuuCGGGGAgcuggaggcgcgccUGGcCUCGGGGg -3'
miRNA:   3'- -GCCCCGGCU---------GUCUUU--------------GUCaGAGCUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.