miRNA display CGI


Results 21 - 40 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 3' -68.3 NC_006560.1 + 59557 0.66 0.401028
Target:  5'- cGCCuCCGgCCCgGCagGCcacaCCCUCCCGu -3'
miRNA:   3'- -CGG-GGUgGGGgCGggCGa---GGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 119470 0.66 0.401028
Target:  5'- aCCCCGCgUCCCGCgCGCUCguccagcgauUCUgCCGg -3'
miRNA:   3'- cGGGGUG-GGGGCGgGCGAG----------GGAgGGC- -5'
31014 3' -68.3 NC_006560.1 + 15994 0.66 0.397127
Target:  5'- cGCCCCGCCCCgacaGCCCccguaccaccggagcGCgacggggcgccggcaCCC-CCCGg -3'
miRNA:   3'- -CGGGGUGGGGg---CGGG---------------CGa--------------GGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 8264 0.66 0.39635
Target:  5'- cGCCCCGugcccuCCCCCGCCCacgggggguguuuuGUuuugguggguguggUCCCUUUCGc -3'
miRNA:   3'- -CGGGGU------GGGGGCGGG--------------CG--------------AGGGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 87732 0.66 0.39325
Target:  5'- gGCCUCGuccUCCCCGCCCGC-CUUgcaCUCGa -3'
miRNA:   3'- -CGGGGU---GGGGGCGGGCGaGGGa--GGGC- -5'
31014 3' -68.3 NC_006560.1 + 65774 0.66 0.39325
Target:  5'- -aCCCGCCaCUCGCCCGgUCuccagaccacgCCUUCCa -3'
miRNA:   3'- cgGGGUGG-GGGCGGGCgAG-----------GGAGGGc -5'
31014 3' -68.3 NC_006560.1 + 55150 0.66 0.39325
Target:  5'- cGCCgUCACCCCC-UCCGCgCgCCgucgCCCGg -3'
miRNA:   3'- -CGG-GGUGGGGGcGGGCGaG-GGa---GGGC- -5'
31014 3' -68.3 NC_006560.1 + 40148 0.66 0.39325
Target:  5'- aGCCCCGCCCCgcgucaCGCgucaaagaugcgCCGCUggaUCUCCUGc -3'
miRNA:   3'- -CGGGGUGGGG------GCG------------GGCGAg--GGAGGGC- -5'
31014 3' -68.3 NC_006560.1 + 128293 0.66 0.39325
Target:  5'- gGCCCCGggggCgCGCCCGCggggcgUCCC-CCCGg -3'
miRNA:   3'- -CGGGGUgg--GgGCGGGCG------AGGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 133283 0.66 0.39325
Target:  5'- cGCCCCGCCgCCUGCC-GCa-CCUCgCa -3'
miRNA:   3'- -CGGGGUGG-GGGCGGgCGagGGAGgGc -5'
31014 3' -68.3 NC_006560.1 + 141426 0.66 0.39325
Target:  5'- nCCCCuCCUCCcCCUcCUCCCUCCUc -3'
miRNA:   3'- cGGGGuGGGGGcGGGcGAGGGAGGGc -5'
31014 3' -68.3 NC_006560.1 + 82573 0.66 0.39325
Target:  5'- aCCCCGgggcguuccucCCCCCGgCCGCggcucgcCCCgaggcCCCGg -3'
miRNA:   3'- cGGGGU-----------GGGGGCgGGCGa------GGGa----GGGC- -5'
31014 3' -68.3 NC_006560.1 + 84365 0.66 0.39325
Target:  5'- cGgCUCGCCCgggaCCGCCgCGcCUCCCggcucgCCCGc -3'
miRNA:   3'- -CgGGGUGGG----GGCGG-GC-GAGGGa-----GGGC- -5'
31014 3' -68.3 NC_006560.1 + 149873 0.66 0.39325
Target:  5'- cCCCCggcACCCCCGgCCGCggaagggCCCcgcgCgCCGa -3'
miRNA:   3'- cGGGG---UGGGGGCgGGCGa------GGGa---G-GGC- -5'
31014 3' -68.3 NC_006560.1 + 29043 0.66 0.390936
Target:  5'- cGCCCCGuauuugggccgcguCUCCgGCCgGCggggCCCgCCCGu -3'
miRNA:   3'- -CGGGGU--------------GGGGgCGGgCGa---GGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 106030 0.66 0.390936
Target:  5'- cGUCCUcggguccgucguggACCCCCGCaaCCGCUcggcgaucgaggCCCUCCgGc -3'
miRNA:   3'- -CGGGG--------------UGGGGGCG--GGCGA------------GGGAGGgC- -5'
31014 3' -68.3 NC_006560.1 + 119784 0.66 0.385571
Target:  5'- gGCggUGCCCCCGCCCGa--CC-CCCGg -3'
miRNA:   3'- -CGggGUGGGGGCGGGCgagGGaGGGC- -5'
31014 3' -68.3 NC_006560.1 + 119306 0.66 0.385571
Target:  5'- cGCCCCGCCgCCCaaugccGCCCGCagggUCugcgagcgguaCCUgCCGg -3'
miRNA:   3'- -CGGGGUGG-GGG------CGGGCG----AG-----------GGAgGGC- -5'
31014 3' -68.3 NC_006560.1 + 111104 0.66 0.385571
Target:  5'- cGCCgCACCCucaaugCCGCCUuCUCCCUggccaCCGa -3'
miRNA:   3'- -CGGgGUGGG------GGCGGGcGAGGGAg----GGC- -5'
31014 3' -68.3 NC_006560.1 + 52364 0.66 0.385571
Target:  5'- cGCUCCGacgaCCUgcaGCCCGCgUUCCUCaCCGg -3'
miRNA:   3'- -CGGGGUg---GGGg--CGGGCG-AGGGAG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.