miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31014 5' -55.5 NC_006560.1 + 34567 0.67 0.911781
Target:  5'- gGCCGGGGguGCGcGACGGGga-GAGa- -3'
miRNA:   3'- -CGGUCCUacUGC-CUGCCCaagCUCag -5'
31014 5' -55.5 NC_006560.1 + 102794 0.67 0.911781
Target:  5'- ---uGGGUGGaaGACGGGggugcgcgUCGAGUCg -3'
miRNA:   3'- cgguCCUACUgcCUGCCCa-------AGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 108504 0.67 0.911781
Target:  5'- cGCCGGGGggagGGCGGccggcgGCGGGccCGGGg- -3'
miRNA:   3'- -CGGUCCUa---CUGCC------UGCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 147384 0.67 0.911781
Target:  5'- uGCgGGGggGGCGGAgGGGagcgCGGG-Cg -3'
miRNA:   3'- -CGgUCCuaCUGCCUgCCCaa--GCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 26231 0.67 0.909392
Target:  5'- cGCCAGGAaccccggaggccgGGcCGGAgGGGggCGcGUCg -3'
miRNA:   3'- -CGGUCCUa------------CU-GCCUgCCCaaGCuCAG- -5'
31014 5' -55.5 NC_006560.1 + 72969 0.67 0.905738
Target:  5'- gGCCGcuacccGGAc-ACGGGCGGGgUCGuGUCg -3'
miRNA:   3'- -CGGU------CCUacUGCCUGCCCaAGCuCAG- -5'
31014 5' -55.5 NC_006560.1 + 146603 0.67 0.905738
Target:  5'- gGCCGGGcgcuUG-CGGGCcuGGGUcUGGGUCu -3'
miRNA:   3'- -CGGUCCu---ACuGCCUG--CCCAaGCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 136805 0.67 0.899464
Target:  5'- aGCCAGGAcca-GGACGccggccgcgugcGGUUCGAGg- -3'
miRNA:   3'- -CGGUCCUacugCCUGC------------CCAAGCUCag -5'
31014 5' -55.5 NC_006560.1 + 3414 0.67 0.899464
Target:  5'- cGCCggcGGGcgGGCGG-CGGGcgCGGG-Cg -3'
miRNA:   3'- -CGG---UCCuaCUGCCuGCCCaaGCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 26472 0.67 0.89296
Target:  5'- cGCCGGGAgcggccGGCGGccccgGCGGGgggCGGG-Cg -3'
miRNA:   3'- -CGGUCCUa-----CUGCC-----UGCCCaa-GCUCaG- -5'
31014 5' -55.5 NC_006560.1 + 28414 0.67 0.89296
Target:  5'- gGCCGGGGcgGGCcgGGGCGGGc-CGAGg- -3'
miRNA:   3'- -CGGUCCUa-CUG--CCUGCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 134268 0.67 0.88623
Target:  5'- aGCCGGGca---GGGCGGGgUCGAccGUCg -3'
miRNA:   3'- -CGGUCCuacugCCUGCCCaAGCU--CAG- -5'
31014 5' -55.5 NC_006560.1 + 16351 0.67 0.88623
Target:  5'- cGCCAGGAgcGACGGccACGGag-CGAGg- -3'
miRNA:   3'- -CGGUCCUa-CUGCC--UGCCcaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 31946 0.67 0.88623
Target:  5'- cGCgGGGGgcgGcCGGGCGGGggcgCGAGa- -3'
miRNA:   3'- -CGgUCCUa--CuGCCUGCCCaa--GCUCag -5'
31014 5' -55.5 NC_006560.1 + 107973 0.67 0.88623
Target:  5'- gGCCGGGGagGGCGGcgcCGGGacgucggcCGGGUCg -3'
miRNA:   3'- -CGGUCCUa-CUGCCu--GCCCaa------GCUCAG- -5'
31014 5' -55.5 NC_006560.1 + 35294 0.67 0.88623
Target:  5'- cCCGGGGUccgggGGCGcGGCGGGggcUCGGGcUCg -3'
miRNA:   3'- cGGUCCUA-----CUGC-CUGCCCa--AGCUC-AG- -5'
31014 5' -55.5 NC_006560.1 + 55478 0.67 0.88623
Target:  5'- cGCCGGcGAcGACGGcguuuuccGCGGGcgCgGGGUCg -3'
miRNA:   3'- -CGGUC-CUaCUGCC--------UGCCCaaG-CUCAG- -5'
31014 5' -55.5 NC_006560.1 + 66749 0.67 0.879277
Target:  5'- cGCCcGGGUGGCGGA-GGG--CGAGg- -3'
miRNA:   3'- -CGGuCCUACUGCCUgCCCaaGCUCag -5'
31014 5' -55.5 NC_006560.1 + 33083 0.67 0.879277
Target:  5'- gGCgGGGAaGGCGGGCGaGGgcagggGGGUCg -3'
miRNA:   3'- -CGgUCCUaCUGCCUGC-CCaag---CUCAG- -5'
31014 5' -55.5 NC_006560.1 + 8843 0.67 0.879277
Target:  5'- cGCgGGGGuuccaUGuCGGGCGGGgUCG-GUCu -3'
miRNA:   3'- -CGgUCCU-----ACuGCCUGCCCaAGCuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.