miRNA display CGI


Results 21 - 40 of 561 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31015 3' -60.5 NC_006560.1 + 26385 0.66 0.755414
Target:  5'- cCCGGCcggggCGCagggGCGCGCCcCCGg-GCg -3'
miRNA:   3'- -GGCUGua---GCGg---CGCGCGGuGGCgaCG- -5'
31015 3' -60.5 NC_006560.1 + 142551 0.66 0.755414
Target:  5'- gCCGggcGCGUCGgaCGCGgGCCGCCGg--- -3'
miRNA:   3'- -GGC---UGUAGCg-GCGCgCGGUGGCgacg -5'
31015 3' -60.5 NC_006560.1 + 68461 0.66 0.754494
Target:  5'- gCCGGCGcggaccCGCCaGUGCGUCgcggaguggacggACCGCUGg -3'
miRNA:   3'- -GGCUGUa-----GCGG-CGCGCGG-------------UGGCGACg -5'
31015 3' -60.5 NC_006560.1 + 66301 0.66 0.754494
Target:  5'- aCgGugAUCGCCGaucugggGCGCCccggguuGCCGgUGUg -3'
miRNA:   3'- -GgCugUAGCGGCg------CGCGG-------UGGCgACG- -5'
31015 3' -60.5 NC_006560.1 + 147471 0.66 0.746173
Target:  5'- aCCGGCgugguuGUCGUCGUcgGUGUCGUCGCUGUc -3'
miRNA:   3'- -GGCUG------UAGCGGCG--CGCGGUGGCGACG- -5'
31015 3' -60.5 NC_006560.1 + 130828 0.66 0.746173
Target:  5'- gCCGugA-CGgCGCGCGUC-CUGgUGCc -3'
miRNA:   3'- -GGCugUaGCgGCGCGCGGuGGCgACG- -5'
31015 3' -60.5 NC_006560.1 + 109758 0.66 0.746173
Target:  5'- -gGACAcUCgGCCGCGCaGCCGCCcCgggGUg -3'
miRNA:   3'- ggCUGU-AG-CGGCGCG-CGGUGGcGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 71838 0.66 0.746173
Target:  5'- aCGACuucuUCGCgGgGCcugggcccgGCgGCCGCUGUc -3'
miRNA:   3'- gGCUGu---AGCGgCgCG---------CGgUGGCGACG- -5'
31015 3' -60.5 NC_006560.1 + 3306 0.66 0.746173
Target:  5'- gCgGGCGgugagCGCCGCGgGCCGggggCGCggGCg -3'
miRNA:   3'- -GgCUGUa----GCGGCGCgCGGUg---GCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 42728 0.66 0.746173
Target:  5'- gCCGcgAUCGCCGgggGCGUguCCGCgUGCg -3'
miRNA:   3'- -GGCugUAGCGGCg--CGCGguGGCG-ACG- -5'
31015 3' -60.5 NC_006560.1 + 45725 0.66 0.746173
Target:  5'- cCCG-CggCGCagGCGCGCCGCgGgCUcGCg -3'
miRNA:   3'- -GGCuGuaGCGg-CGCGCGGUGgC-GA-CG- -5'
31015 3' -60.5 NC_006560.1 + 23372 0.66 0.746173
Target:  5'- cCCGGCcUCGCCG-GCuaCGgCGCcGCg -3'
miRNA:   3'- -GGCUGuAGCGGCgCGcgGUgGCGaCG- -5'
31015 3' -60.5 NC_006560.1 + 118851 0.66 0.746173
Target:  5'- gCCGAgGUCGCCuuugcgGCGCGCgugcagacggcgUGCCuccgggcccuggGCUGCg -3'
miRNA:   3'- -GGCUgUAGCGG------CGCGCG------------GUGG------------CGACG- -5'
31015 3' -60.5 NC_006560.1 + 114356 0.66 0.746173
Target:  5'- gCCGGgGgcgCGUaCGCGgGCgACCGCgaggGCg -3'
miRNA:   3'- -GGCUgUa--GCG-GCGCgCGgUGGCGa---CG- -5'
31015 3' -60.5 NC_006560.1 + 87961 0.66 0.746173
Target:  5'- aCCG-CGUCGUgGCGuCGaCGCCGCccucguacuUGCg -3'
miRNA:   3'- -GGCuGUAGCGgCGC-GCgGUGGCG---------ACG- -5'
31015 3' -60.5 NC_006560.1 + 85001 0.66 0.746173
Target:  5'- aCCGccuCAUCGaCCGCaUGCUgACCGCgUGCc -3'
miRNA:   3'- -GGCu--GUAGC-GGCGcGCGG-UGGCG-ACG- -5'
31015 3' -60.5 NC_006560.1 + 40678 0.66 0.745243
Target:  5'- cCCGGCGUaguucagcagguaCGUCGCggGCGCCACCaucuugugcGCgggGCu -3'
miRNA:   3'- -GGCUGUA-------------GCGGCG--CGCGGUGG---------CGa--CG- -5'
31015 3' -60.5 NC_006560.1 + 12899 0.66 0.745243
Target:  5'- cUCGugGUCGgCGCcuucgggccGUGCCACCcggcggccugcauGCUGUa -3'
miRNA:   3'- -GGCugUAGCgGCG---------CGCGGUGG-------------CGACG- -5'
31015 3' -60.5 NC_006560.1 + 120885 0.66 0.744313
Target:  5'- aCGugGUCgacccggGCCGCGCcgaaccaGCC-CCGCagGCa -3'
miRNA:   3'- gGCugUAG-------CGGCGCG-------CGGuGGCGa-CG- -5'
31015 3' -60.5 NC_006560.1 + 68030 0.66 0.736839
Target:  5'- cCCGACGgccCGCUGCaG-GCU-CUGCUGCg -3'
miRNA:   3'- -GGCUGUa--GCGGCG-CgCGGuGGCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.