Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31016 | 3' | -60.2 | NC_006560.1 | + | 4489 | 0.68 | 0.526157 |
Target: 5'- cGGGCgcgccccaGAGCCCCG-GGCGgCUGUcGCCc -3' miRNA: 3'- -UUCGa-------CUCGGGGCaCCGC-GACA-UGGu -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 5661 | 0.68 | 0.545842 |
Target: 5'- cGGCUccGCCCCGgGGCGCgggGgcgGCCGg -3' miRNA: 3'- uUCGAcuCGGGGCaCCGCGa--Ca--UGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 128242 | 0.68 | 0.555774 |
Target: 5'- cGGCUGGGCCCagagGUccugcaggaGGCGCUGcgcGCCGa -3' miRNA: 3'- uUCGACUCGGGg---CA---------CCGCGACa--UGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 120126 | 0.68 | 0.565758 |
Target: 5'- --cCUGGGCCCCGgGGCGUgGUGgCAc -3' miRNA: 3'- uucGACUCGGGGCaCCGCGaCAUgGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 110174 | 0.69 | 0.46889 |
Target: 5'- -cGC-GAGCgCCGUGGCGggGUACUAc -3' miRNA: 3'- uuCGaCUCGgGGCACCGCgaCAUGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 137533 | 0.69 | 0.46889 |
Target: 5'- cGGC-GGGCUcauguCCGUGGCGCUGcagACCGa -3' miRNA: 3'- uUCGaCUCGG-----GGCACCGCGACa--UGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 112764 | 0.69 | 0.497153 |
Target: 5'- cGGCggcGAGaCCCCGaggagugcaUGGCGgUGUACCGg -3' miRNA: 3'- uUCGa--CUC-GGGGC---------ACCGCgACAUGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 52233 | 0.7 | 0.450513 |
Target: 5'- cGAGCUGccuGGCCCCGgccGGCGCggcGcACCGc -3' miRNA: 3'- -UUCGAC---UCGGGGCa--CCGCGa--CaUGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 10492 | 0.7 | 0.441473 |
Target: 5'- gGGGCggGGGCCCCGUcgGGUcgGCcGUACCAc -3' miRNA: 3'- -UUCGa-CUCGGGGCA--CCG--CGaCAUGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 38072 | 0.72 | 0.319439 |
Target: 5'- cGGCcGGGCCCCGggGGUGUgucgGUGCCGc -3' miRNA: 3'- uUCGaCUCGGGGCa-CCGCGa---CAUGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 91585 | 0.73 | 0.312265 |
Target: 5'- -uGCUGAGUCgCCGcucgaaccUGGCGgUGUACCAg -3' miRNA: 3'- uuCGACUCGG-GGC--------ACCGCgACAUGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 130989 | 0.73 | 0.278231 |
Target: 5'- cGAGUUcGAGCCCCGggggGGCGCcGUcgACCAc -3' miRNA: 3'- -UUCGA-CUCGGGGCa---CCGCGaCA--UGGU- -5' |
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31016 | 3' | -60.2 | NC_006560.1 | + | 113815 | 1.05 | 0.001619 |
Target: 5'- cAAGCUGAGCCCCGUGGCGCUGUACCAc -3' miRNA: 3'- -UUCGACUCGGGGCACCGCGACAUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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