miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31016 3' -60.2 NC_006560.1 + 113815 1.05 0.001619
Target:  5'- cAAGCUGAGCCCCGUGGCGCUGUACCAc -3'
miRNA:   3'- -UUCGACUCGGGGCACCGCGACAUGGU- -5'
31016 3' -60.2 NC_006560.1 + 130989 0.73 0.278231
Target:  5'- cGAGUUcGAGCCCCGggggGGCGCcGUcgACCAc -3'
miRNA:   3'- -UUCGA-CUCGGGGCa---CCGCGaCA--UGGU- -5'
31016 3' -60.2 NC_006560.1 + 91585 0.73 0.312265
Target:  5'- -uGCUGAGUCgCCGcucgaaccUGGCGgUGUACCAg -3'
miRNA:   3'- uuCGACUCGG-GGC--------ACCGCgACAUGGU- -5'
31016 3' -60.2 NC_006560.1 + 38072 0.72 0.319439
Target:  5'- cGGCcGGGCCCCGggGGUGUgucgGUGCCGc -3'
miRNA:   3'- uUCGaCUCGGGGCa-CCGCGa---CAUGGU- -5'
31016 3' -60.2 NC_006560.1 + 10492 0.7 0.441473
Target:  5'- gGGGCggGGGCCCCGUcgGGUcgGCcGUACCAc -3'
miRNA:   3'- -UUCGa-CUCGGGGCA--CCG--CGaCAUGGU- -5'
31016 3' -60.2 NC_006560.1 + 52233 0.7 0.450513
Target:  5'- cGAGCUGccuGGCCCCGgccGGCGCggcGcACCGc -3'
miRNA:   3'- -UUCGAC---UCGGGGCa--CCGCGa--CaUGGU- -5'
31016 3' -60.2 NC_006560.1 + 137533 0.69 0.46889
Target:  5'- cGGC-GGGCUcauguCCGUGGCGCUGcagACCGa -3'
miRNA:   3'- uUCGaCUCGG-----GGCACCGCGACa--UGGU- -5'
31016 3' -60.2 NC_006560.1 + 110174 0.69 0.46889
Target:  5'- -cGC-GAGCgCCGUGGCGggGUACUAc -3'
miRNA:   3'- uuCGaCUCGgGGCACCGCgaCAUGGU- -5'
31016 3' -60.2 NC_006560.1 + 112764 0.69 0.497153
Target:  5'- cGGCggcGAGaCCCCGaggagugcaUGGCGgUGUACCGg -3'
miRNA:   3'- uUCGa--CUC-GGGGC---------ACCGCgACAUGGU- -5'
31016 3' -60.2 NC_006560.1 + 4489 0.68 0.526157
Target:  5'- cGGGCgcgccccaGAGCCCCG-GGCGgCUGUcGCCc -3'
miRNA:   3'- -UUCGa-------CUCGGGGCaCCGC-GACA-UGGu -5'
31016 3' -60.2 NC_006560.1 + 5661 0.68 0.545842
Target:  5'- cGGCUccGCCCCGgGGCGCgggGgcgGCCGg -3'
miRNA:   3'- uUCGAcuCGGGGCaCCGCGa--Ca--UGGU- -5'
31016 3' -60.2 NC_006560.1 + 128242 0.68 0.555774
Target:  5'- cGGCUGGGCCCagagGUccugcaggaGGCGCUGcgcGCCGa -3'
miRNA:   3'- uUCGACUCGGGg---CA---------CCGCGACa--UGGU- -5'
31016 3' -60.2 NC_006560.1 + 120126 0.68 0.565758
Target:  5'- --cCUGGGCCCCGgGGCGUgGUGgCAc -3'
miRNA:   3'- uucGACUCGGGGCaCCGCGaCAUgGU- -5'
31016 3' -60.2 NC_006560.1 + 1512 0.67 0.585857
Target:  5'- gGAGCgcgugcaucGGGCCCCG-GGCGCgcgcccgGCCAc -3'
miRNA:   3'- -UUCGa--------CUCGGGGCaCCGCGaca----UGGU- -5'
31016 3' -60.2 NC_006560.1 + 128286 0.67 0.606087
Target:  5'- gGGGgaGGGCCCCGggGGCGCgc--CCGc -3'
miRNA:   3'- -UUCgaCUCGGGGCa-CCGCGacauGGU- -5'
31016 3' -60.2 NC_006560.1 + 142752 0.67 0.606087
Target:  5'- cGGCgcccGGGCCCCGggGGCGCgGgagcgGCCc -3'
miRNA:   3'- uUCGa---CUCGGGGCa-CCGCGaCa----UGGu -5'
31016 3' -60.2 NC_006560.1 + 70098 0.67 0.615219
Target:  5'- cAGCUccGCCCCGUGGCccaGCUgccccccGUGCCc -3'
miRNA:   3'- uUCGAcuCGGGGCACCG---CGA-------CAUGGu -5'
31016 3' -60.2 NC_006560.1 + 87157 0.67 0.616234
Target:  5'- -cGCUGcgcgGGCCCgGcGGCGUaGUACCGg -3'
miRNA:   3'- uuCGAC----UCGGGgCaCCGCGaCAUGGU- -5'
31016 3' -60.2 NC_006560.1 + 44577 0.67 0.626394
Target:  5'- cAGCUGGGCCCCGacacGGCGa---GCCu -3'
miRNA:   3'- uUCGACUCGGGGCa---CCGCgacaUGGu -5'
31016 3' -60.2 NC_006560.1 + 51880 0.67 0.626394
Target:  5'- -cGCUcGGGCCCCG-GGCGggGUGgCGg -3'
miRNA:   3'- uuCGA-CUCGGGGCaCCGCgaCAUgGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.