miRNA display CGI


Results 21 - 40 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31016 5' -64.3 NC_006560.1 + 92419 0.66 0.521428
Target:  5'- gGACGcGGUCcacgaGCACCCCGGGGcgUGGaCg -3'
miRNA:   3'- -CUGC-CCGGa----CGUGGGGCCCUa-GCC-Ga -5'
31016 5' -64.3 NC_006560.1 + 9966 0.66 0.521428
Target:  5'- cGGCGGGCgaGCgGCCUCGGGcagccgCGGgUg -3'
miRNA:   3'- -CUGCCCGgaCG-UGGGGCCCua----GCCgA- -5'
31016 5' -64.3 NC_006560.1 + 32850 0.66 0.521428
Target:  5'- cGGCGGGCa-GCcCCCCGGGcagaGggGGCa -3'
miRNA:   3'- -CUGCCCGgaCGuGGGGCCC----UagCCGa -5'
31016 5' -64.3 NC_006560.1 + 35286 0.66 0.521428
Target:  5'- cGGCgGGGCCcGgGgUCCGGGGgcgCGGCg -3'
miRNA:   3'- -CUG-CCCGGaCgUgGGGCCCUa--GCCGa -5'
31016 5' -64.3 NC_006560.1 + 2652 0.66 0.520496
Target:  5'- cGACGGGCCcgucgGCGggccacuCCUCGGG--CGGCa -3'
miRNA:   3'- -CUGCCCGGa----CGU-------GGGGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 3777 0.66 0.520496
Target:  5'- cGGCGGGaCCgcgGCGCgcgcggccgccagCCCGGGcaCGGCg -3'
miRNA:   3'- -CUGCCC-GGa--CGUG-------------GGGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 149896 0.66 0.520496
Target:  5'- --aGGGCCccgcGCGCCgaaggaacggcggCCGGGcgCGGCg -3'
miRNA:   3'- cugCCCGGa---CGUGG-------------GGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 4509 0.66 0.518634
Target:  5'- gGGCGGcugucgcccaggccGCCguagagcacGCGCCCCGGGGgcgggggcUCGGCc -3'
miRNA:   3'- -CUGCC--------------CGGa--------CGUGGGGCCCU--------AGCCGa -5'
31016 5' -64.3 NC_006560.1 + 51245 0.66 0.512137
Target:  5'- gGGCGcGcGCCUGCACCCgCGc--UCGGCg -3'
miRNA:   3'- -CUGC-C-CGGACGUGGG-GCccuAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 93782 0.66 0.512137
Target:  5'- -cUGcGGCgCUGCgAUCCCaGGAUCGGCc -3'
miRNA:   3'- cuGC-CCG-GACG-UGGGGcCCUAGCCGa -5'
31016 5' -64.3 NC_006560.1 + 99788 0.66 0.512137
Target:  5'- --gGGGCCccaaacgGgGCCCCGGGGcgUGGCc -3'
miRNA:   3'- cugCCCGGa------CgUGGGGCCCUa-GCCGa -5'
31016 5' -64.3 NC_006560.1 + 39625 0.66 0.512137
Target:  5'- cGGCGGGCgUcgGCgUCCGGGcgCGGCg -3'
miRNA:   3'- -CUGCCCGgAcgUG-GGGCCCuaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 58385 0.66 0.512137
Target:  5'- aGCGGcGCCcgcgucgGCGcCCCCGGGGgccgcgUCGGUg -3'
miRNA:   3'- cUGCC-CGGa------CGU-GGGGCCCU------AGCCGa -5'
31016 5' -64.3 NC_006560.1 + 85543 0.66 0.512137
Target:  5'- gGGCGGGg--GCGCCCguggggggCGGGggCGGCUc -3'
miRNA:   3'- -CUGCCCggaCGUGGG--------GCCCuaGCCGA- -5'
31016 5' -64.3 NC_006560.1 + 149152 0.66 0.512137
Target:  5'- cGCGGGgCgGC-CCCCaGGGG-CGGCg -3'
miRNA:   3'- cUGCCCgGaCGuGGGG-CCCUaGCCGa -5'
31016 5' -64.3 NC_006560.1 + 86269 0.66 0.511212
Target:  5'- cGGCGcgcgcauGGCCgcgGC-CUCCGGGAagUCGGCc -3'
miRNA:   3'- -CUGC-------CCGGa--CGuGGGGCCCU--AGCCGa -5'
31016 5' -64.3 NC_006560.1 + 35177 0.66 0.502915
Target:  5'- -cCGGGCCcgggGCcccGCCCCGGGGgcgcCGGg- -3'
miRNA:   3'- cuGCCCGGa---CG---UGGGGCCCUa---GCCga -5'
31016 5' -64.3 NC_006560.1 + 24096 0.66 0.502915
Target:  5'- cGGCGGGCCcGaC-CCCCGcGG--CGGCUg -3'
miRNA:   3'- -CUGCCCGGaC-GuGGGGC-CCuaGCCGA- -5'
31016 5' -64.3 NC_006560.1 + 147616 0.66 0.502915
Target:  5'- --gGGGCC-GCcuCCCCGGGGaggCGGUg -3'
miRNA:   3'- cugCCCGGaCGu-GGGGCCCUa--GCCGa -5'
31016 5' -64.3 NC_006560.1 + 146045 0.66 0.502915
Target:  5'- gGGCGGGgacacGCACCCgGGGG-CGGCc -3'
miRNA:   3'- -CUGCCCgga--CGUGGGgCCCUaGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.