miRNA display CGI


Results 21 - 40 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 3' -55.7 NC_006560.1 + 89631 0.66 0.8973
Target:  5'- aCGUGUAcgcccGCGCgUGCCcGGcCGAgGGGCu -3'
miRNA:   3'- -GUACGU-----CGCG-AUGGaCCuGUUgCCCG- -5'
31017 3' -55.7 NC_006560.1 + 62587 0.66 0.896643
Target:  5'- gCGUGCgcgagcaGGCGC-ACCaGGGCGgagGCGGGg -3'
miRNA:   3'- -GUACG-------UCGCGaUGGaCCUGU---UGCCCg -5'
31017 3' -55.7 NC_006560.1 + 24448 0.66 0.895322
Target:  5'- --gGCGGCGuCUcccccgccccgcccGCCUGGACcgccgcGCGcGGCg -3'
miRNA:   3'- guaCGUCGC-GA--------------UGGACCUGu-----UGC-CCG- -5'
31017 3' -55.7 NC_006560.1 + 14427 0.66 0.890623
Target:  5'- --gGCgaGGCGUUGUCUGGGCGGCgguccgccggGGGCa -3'
miRNA:   3'- guaCG--UCGCGAUGGACCUGUUG----------CCCG- -5'
31017 3' -55.7 NC_006560.1 + 17094 0.66 0.890623
Target:  5'- cCGUGaccuGCGCgagGCUcaggGGGCGggaGCGGGCg -3'
miRNA:   3'- -GUACgu--CGCGa--UGGa---CCUGU---UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 24072 0.66 0.890623
Target:  5'- --cGCGGCGCUcaccgcccGCCcGccCGGCGGGCc -3'
miRNA:   3'- guaCGUCGCGA--------UGGaCcuGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 103795 0.66 0.890623
Target:  5'- gAUGCuGCGaauCUACgUGGACGGgccgcacggccUGGGCa -3'
miRNA:   3'- gUACGuCGC---GAUGgACCUGUU-----------GCCCG- -5'
31017 3' -55.7 NC_006560.1 + 123022 0.66 0.890623
Target:  5'- -cUGgGGCGCUACaucGGcCAgcugGCGGGCc -3'
miRNA:   3'- guACgUCGCGAUGga-CCuGU----UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 18334 0.66 0.890623
Target:  5'- uCGUGC-GCGCggccgACCUGcGGCG-CGuGGCc -3'
miRNA:   3'- -GUACGuCGCGa----UGGAC-CUGUuGC-CCG- -5'
31017 3' -55.7 NC_006560.1 + 125048 0.66 0.890623
Target:  5'- --cGCGGCGgUcGCCggcGGACuucCGGGCc -3'
miRNA:   3'- guaCGUCGCgA-UGGa--CCUGuu-GCCCG- -5'
31017 3' -55.7 NC_006560.1 + 135999 0.66 0.890623
Target:  5'- gCcgGgGGCGggACCgaGGACGGCcgGGGCg -3'
miRNA:   3'- -GuaCgUCGCgaUGGa-CCUGUUG--CCCG- -5'
31017 3' -55.7 NC_006560.1 + 52578 0.66 0.889943
Target:  5'- --cGCAGUacuggaaGC-ACCUGcaggcgguGGCGACGGGCg -3'
miRNA:   3'- guaCGUCG-------CGaUGGAC--------CUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 65975 0.66 0.887888
Target:  5'- gGUGCGGCGCcucgaccUGCCcgGGAgAgcaccguggggaccGCGGGUc -3'
miRNA:   3'- gUACGUCGCG-------AUGGa-CCUgU--------------UGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 145775 0.66 0.884417
Target:  5'- --cGCGcGCGCUucucuCUgucucucuucuuccgGGGCGGCGGGCa -3'
miRNA:   3'- guaCGU-CGCGAu----GGa--------------CCUGUUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 132059 0.66 0.883716
Target:  5'- --cGgGGCGCUG-CUGGACu-CGGaGCg -3'
miRNA:   3'- guaCgUCGCGAUgGACCUGuuGCC-CG- -5'
31017 3' -55.7 NC_006560.1 + 139785 0.66 0.883716
Target:  5'- gAUGCGGCGa-GCCgacGGACGACGcuGCc -3'
miRNA:   3'- gUACGUCGCgaUGGa--CCUGUUGCc-CG- -5'
31017 3' -55.7 NC_006560.1 + 77426 0.66 0.883716
Target:  5'- --cGCccGGCGCUGCCguccgagGGGCu-CGaGGCg -3'
miRNA:   3'- guaCG--UCGCGAUGGa------CCUGuuGC-CCG- -5'
31017 3' -55.7 NC_006560.1 + 112573 0.66 0.883716
Target:  5'- --cGCGGgGCguuCgaGGACcGCGGGUa -3'
miRNA:   3'- guaCGUCgCGau-GgaCCUGuUGCCCG- -5'
31017 3' -55.7 NC_006560.1 + 114069 0.66 0.883716
Target:  5'- cCGUGC-GCGCccCCgugacGGACAugGGGa -3'
miRNA:   3'- -GUACGuCGCGauGGa----CCUGUugCCCg -5'
31017 3' -55.7 NC_006560.1 + 33269 0.66 0.883716
Target:  5'- --gGgGGuCGgggGCCUGGGCGGCGGGg -3'
miRNA:   3'- guaCgUC-GCga-UGGACCUGUUGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.