miRNA display CGI


Results 21 - 40 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31017 5' -65.9 NC_006560.1 + 77177 0.66 0.45627
Target:  5'- cGCGCGCagaGCCCGGacgagcGCCGCGCgccGGa -3'
miRNA:   3'- -UGCGCGcacCGGGCC------CGGUGCGa--CCa -5'
31017 5' -65.9 NC_006560.1 + 100635 0.66 0.453671
Target:  5'- gACGCG-GUGGUCCacguugauggcgagGGGCCcCGCgGGg -3'
miRNA:   3'- -UGCGCgCACCGGG--------------CCCGGuGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 36015 0.66 0.45108
Target:  5'- -gGgGUGgggGGCCCGGGguguauuuggcuuguCCGCGCgGGUg -3'
miRNA:   3'- ugCgCGCa--CCGGGCCC---------------GGUGCGaCCA- -5'
31017 5' -65.9 NC_006560.1 + 67845 0.66 0.447638
Target:  5'- cCGaCGCca-GCCCGGGCCGCGCg--- -3'
miRNA:   3'- uGC-GCGcacCGGGCCCGGUGCGacca -5'
31017 5' -65.9 NC_006560.1 + 90314 0.66 0.447638
Target:  5'- uCGC-CGUGGCgcuCCGGGCC-CGCaacgUGGa -3'
miRNA:   3'- uGCGcGCACCG---GGCCCGGuGCG----ACCa -5'
31017 5' -65.9 NC_006560.1 + 92384 0.66 0.447638
Target:  5'- -gGCGCGgcccuggaGGCCgGGGCCcgcGCGCUcGUg -3'
miRNA:   3'- ugCGCGCa-------CCGGgCCCGG---UGCGAcCA- -5'
31017 5' -65.9 NC_006560.1 + 9967 0.66 0.447638
Target:  5'- gGCGgGCGagcGGCCuCGGGCagcCGCgGGUg -3'
miRNA:   3'- -UGCgCGCa--CCGG-GCCCGgu-GCGaCCA- -5'
31017 5' -65.9 NC_006560.1 + 15294 0.66 0.447638
Target:  5'- gGCGCGgcggcgGUGGCCuCGGGCgcccccucCGCGCcGGUc -3'
miRNA:   3'- -UGCGCg-----CACCGG-GCCCG--------GUGCGaCCA- -5'
31017 5' -65.9 NC_006560.1 + 34808 0.66 0.447638
Target:  5'- cCGCgGCGcGGCCgGGGCCACGaCa--- -3'
miRNA:   3'- uGCG-CGCaCCGGgCCCGGUGC-Gacca -5'
31017 5' -65.9 NC_006560.1 + 27387 0.66 0.442503
Target:  5'- -gGCGCGggGGgCCGGGCCcucccgcggcggcgcGCGCgcgGGc -3'
miRNA:   3'- ugCGCGCa-CCgGGCCCGG---------------UGCGa--CCa -5'
31017 5' -65.9 NC_006560.1 + 76936 0.66 0.439098
Target:  5'- -gGUG-GUGGCCCGGGUCcCGUgGGa -3'
miRNA:   3'- ugCGCgCACCGGGCCCGGuGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 117675 0.66 0.439098
Target:  5'- uCGcCGCGUacauGCCgCGGGaCGCGCUGGg -3'
miRNA:   3'- uGC-GCGCAc---CGG-GCCCgGUGCGACCa -5'
31017 5' -65.9 NC_006560.1 + 25980 0.66 0.439098
Target:  5'- cCGCGgGgGGCgaGGGCCGCGggGGg -3'
miRNA:   3'- uGCGCgCaCCGggCCCGGUGCgaCCa -5'
31017 5' -65.9 NC_006560.1 + 4603 0.66 0.439098
Target:  5'- aGCGCGCGUagaagGcGCCCGaGGCCuCGUcGGc -3'
miRNA:   3'- -UGCGCGCA-----C-CGGGC-CCGGuGCGaCCa -5'
31017 5' -65.9 NC_006560.1 + 146879 0.66 0.430651
Target:  5'- -aGCGCcugggccagGGCCUGGGCCAgggcCGcCUGGg -3'
miRNA:   3'- ugCGCGca-------CCGGGCCCGGU----GC-GACCa -5'
31017 5' -65.9 NC_006560.1 + 78087 0.66 0.430651
Target:  5'- gGCGCuCGggGGCCuCGacGGCCcccggGCGCUGGUg -3'
miRNA:   3'- -UGCGcGCa-CCGG-GC--CCGG-----UGCGACCA- -5'
31017 5' -65.9 NC_006560.1 + 25326 0.66 0.430651
Target:  5'- cGCGUGCGcUGGgCCGccGGCCGCGCcGa- -3'
miRNA:   3'- -UGCGCGC-ACCgGGC--CCGGUGCGaCca -5'
31017 5' -65.9 NC_006560.1 + 16396 0.66 0.430651
Target:  5'- gGCGgGCGUcGCCUGGaGCCGCGgUGc- -3'
miRNA:   3'- -UGCgCGCAcCGGGCC-CGGUGCgACca -5'
31017 5' -65.9 NC_006560.1 + 2643 0.66 0.430651
Target:  5'- gGCGCGCGacgacgGGCCCgucggcGGGCCACucCUcGGg -3'
miRNA:   3'- -UGCGCGCa-----CCGGG------CCCGGUGc-GA-CCa -5'
31017 5' -65.9 NC_006560.1 + 142892 0.66 0.430651
Target:  5'- cUGU-CGUGGCCCcGGCCGCGCcgcGGa -3'
miRNA:   3'- uGCGcGCACCGGGcCCGGUGCGa--CCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.