miRNA display CGI


Results 21 - 40 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 3' -62.4 NC_006560.1 + 27680 0.66 0.681697
Target:  5'- cGCCCgC-CGUCGgUCGGGGUGcGCCGCc -3'
miRNA:   3'- -CGGG-GaGUAGCgGGCCCUGCcUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 45997 0.66 0.672105
Target:  5'- cGCCCCggc-CGUCgGGGGCGcGugcaccACCGCg -3'
miRNA:   3'- -CGGGGaguaGCGGgCCCUGC-C------UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 16293 0.66 0.672105
Target:  5'- aCCCCUgGggcgCGgCgGGGcGCGGGcCCGCg -3'
miRNA:   3'- cGGGGAgUa---GCgGgCCC-UGCCU-GGCG- -5'
31018 3' -62.4 NC_006560.1 + 48218 0.66 0.672105
Target:  5'- cGCCUgCUCGagGaCCUgggcuucgGGGACGGGcCCGCg -3'
miRNA:   3'- -CGGG-GAGUagC-GGG--------CCCUGCCU-GGCG- -5'
31018 3' -62.4 NC_006560.1 + 45801 0.66 0.672105
Target:  5'- gGCCUUUUggCcCCCGGGGCGGAgCa- -3'
miRNA:   3'- -CGGGGAGuaGcGGGCCCUGCCUgGcg -5'
31018 3' -62.4 NC_006560.1 + 48078 0.66 0.672105
Target:  5'- cGCCCCcccggCGUCcCaCCGGGggcGCGGagcuucccgacGCCGCg -3'
miRNA:   3'- -CGGGGa----GUAGcG-GGCCC---UGCC-----------UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 104732 0.66 0.672105
Target:  5'- cGCaCgCUCGcgcgcgaauUCGCCCGGGAgaUGGcccCCGCc -3'
miRNA:   3'- -CG-GgGAGU---------AGCGGGCCCU--GCCu--GGCG- -5'
31018 3' -62.4 NC_006560.1 + 109933 0.66 0.672105
Target:  5'- -aCCCggCcgCGCCCGGGgaagACGaGCUGCu -3'
miRNA:   3'- cgGGGa-GuaGCGGGCCC----UGCcUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 113286 0.66 0.672105
Target:  5'- uGCCCCaCGga-CCCGGuGGCGGACaCGg -3'
miRNA:   3'- -CGGGGaGUagcGGGCC-CUGCCUG-GCg -5'
31018 3' -62.4 NC_006560.1 + 120442 0.66 0.672105
Target:  5'- cGCCCCgUCGagGCCguggugcugcuCGGcuccacccGCGGGCCGCg -3'
miRNA:   3'- -CGGGG-AGUagCGG-----------GCCc-------UGCCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 129159 0.66 0.672105
Target:  5'- cGCCCCgaCGUCgGCCCGGaGGa-GAUCGUc -3'
miRNA:   3'- -CGGGGa-GUAG-CGGGCC-CUgcCUGGCG- -5'
31018 3' -62.4 NC_006560.1 + 91418 0.66 0.662483
Target:  5'- cGUCCUgacCAaCGUCCGGcaGACGGucgACCGCg -3'
miRNA:   3'- -CGGGGa--GUaGCGGGCC--CUGCC---UGGCG- -5'
31018 3' -62.4 NC_006560.1 + 110531 0.66 0.662483
Target:  5'- cGCgCC-CGUgGCCUuuuagggguGGGugGGGCCaGCg -3'
miRNA:   3'- -CGgGGaGUAgCGGG---------CCCugCCUGG-CG- -5'
31018 3' -62.4 NC_006560.1 + 111533 0.66 0.662483
Target:  5'- -aCCCgCGggcgGCCCGuGGACGGAgUGCu -3'
miRNA:   3'- cgGGGaGUag--CGGGC-CCUGCCUgGCG- -5'
31018 3' -62.4 NC_006560.1 + 116493 0.66 0.662483
Target:  5'- cGCCCCcCGagGCCaGGaGGCGGugCaGCu -3'
miRNA:   3'- -CGGGGaGUagCGGgCC-CUGCCugG-CG- -5'
31018 3' -62.4 NC_006560.1 + 140393 0.66 0.662483
Target:  5'- cGUCCCcgggggggguUCAgCGCCgGGGACGGGaggGCu -3'
miRNA:   3'- -CGGGG----------AGUaGCGGgCCCUGCCUgg-CG- -5'
31018 3' -62.4 NC_006560.1 + 115766 0.66 0.662483
Target:  5'- -aCCCgaggCGCCCGGGccgccGCaGGACgGCg -3'
miRNA:   3'- cgGGGaguaGCGGGCCC-----UG-CCUGgCG- -5'
31018 3' -62.4 NC_006560.1 + 133404 0.66 0.662483
Target:  5'- uCUCCUCcUCGCCggagcuCGGGGCGG-CCa- -3'
miRNA:   3'- cGGGGAGuAGCGG------GCCCUGCCuGGcg -5'
31018 3' -62.4 NC_006560.1 + 96003 0.66 0.662483
Target:  5'- cGCCCg-CG-CGcCCCGGGAUGcGGCCucGCg -3'
miRNA:   3'- -CGGGgaGUaGC-GGGCCCUGC-CUGG--CG- -5'
31018 3' -62.4 NC_006560.1 + 19379 0.66 0.662483
Target:  5'- aGCCgCCgguuucUCGCUCGcGGcACGGGCCGg -3'
miRNA:   3'- -CGG-GGagu---AGCGGGC-CC-UGCCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.