miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31018 5' -52 NC_006560.1 + 135713 0.67 0.965659
Target:  5'- aGAGCAcgugcgugcaacGCUCAacgaggUCCugGACUGCGUGGu -3'
miRNA:   3'- -CUCGU------------CGGGU------AGGugUUGAUGUACUg -5'
31018 5' -52 NC_006560.1 + 133707 0.67 0.96217
Target:  5'- -cGCAGCaCGUCCGCGAagUACggGGCa -3'
miRNA:   3'- cuCGUCGgGUAGGUGUUg-AUGuaCUG- -5'
31018 5' -52 NC_006560.1 + 75884 0.67 0.96217
Target:  5'- cGGCGuGCCCucccUCCGCcgaUACGUGGCg -3'
miRNA:   3'- cUCGU-CGGGu---AGGUGuugAUGUACUG- -5'
31018 5' -52 NC_006560.1 + 51212 0.67 0.96217
Target:  5'- gGAGCAGaCCGUCCAgUGGCUGucgGUGGCg -3'
miRNA:   3'- -CUCGUCgGGUAGGU-GUUGAUg--UACUG- -5'
31018 5' -52 NC_006560.1 + 44726 0.67 0.958441
Target:  5'- --cCAGgCCAUCCGCA---GCAUGGCg -3'
miRNA:   3'- cucGUCgGGUAGGUGUugaUGUACUG- -5'
31018 5' -52 NC_006560.1 + 57082 0.67 0.958441
Target:  5'- uGGGcCAGCgCCGUcaggcCCGCGGCcGCGUGGCc -3'
miRNA:   3'- -CUC-GUCG-GGUA-----GGUGUUGaUGUACUG- -5'
31018 5' -52 NC_006560.1 + 64689 0.67 0.958441
Target:  5'- uGGGCGGCaCGUCCACGA--ACAUGcGCu -3'
miRNA:   3'- -CUCGUCGgGUAGGUGUUgaUGUAC-UG- -5'
31018 5' -52 NC_006560.1 + 70049 0.67 0.958441
Target:  5'- uGAGCAGCUgcUCCGCgAGCUGCAc--- -3'
miRNA:   3'- -CUCGUCGGguAGGUG-UUGAUGUacug -5'
31018 5' -52 NC_006560.1 + 38815 0.67 0.950246
Target:  5'- cAGCAGCUCGUCCGCcgaGGCcACGgccucGACg -3'
miRNA:   3'- cUCGUCGGGUAGGUG---UUGaUGUa----CUG- -5'
31018 5' -52 NC_006560.1 + 121171 0.67 0.94981
Target:  5'- cGAGCAGCa---CCGCGGCgaggaagUACGUGGCg -3'
miRNA:   3'- -CUCGUCGgguaGGUGUUG-------AUGUACUG- -5'
31018 5' -52 NC_006560.1 + 80500 0.68 0.945771
Target:  5'- -cGCGGCCC-UCuCGCGgcGCUACGUG-Cg -3'
miRNA:   3'- cuCGUCGGGuAG-GUGU--UGAUGUACuG- -5'
31018 5' -52 NC_006560.1 + 53027 0.68 0.941039
Target:  5'- cGGGCGGCaCCAcgggcUCCAUGcAgUGCAUGGCc -3'
miRNA:   3'- -CUCGUCG-GGU-----AGGUGU-UgAUGUACUG- -5'
31018 5' -52 NC_006560.1 + 101813 0.69 0.919505
Target:  5'- gGAGCAGCg---CCGCGACcacgGCGUGGCc -3'
miRNA:   3'- -CUCGUCGgguaGGUGUUGa---UGUACUG- -5'
31018 5' -52 NC_006560.1 + 42579 0.69 0.913468
Target:  5'- cGGCGGCCaCGUCCGCcgccgagaGACgcgcgucccGCGUGACg -3'
miRNA:   3'- cUCGUCGG-GUAGGUG--------UUGa--------UGUACUG- -5'
31018 5' -52 NC_006560.1 + 144336 0.69 0.907171
Target:  5'- -cGCGGCCCcgCCGCGGgcGCGaGACg -3'
miRNA:   3'- cuCGUCGGGuaGGUGUUgaUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 63863 0.69 0.907171
Target:  5'- cAGCAcGCCCucAUCCGCAGCacggcCAUGAUg -3'
miRNA:   3'- cUCGU-CGGG--UAGGUGUUGau---GUACUG- -5'
31018 5' -52 NC_006560.1 + 4149 0.69 0.907171
Target:  5'- cGGCGGCUCAUggCCACGGCggcggcgGCGUGGg -3'
miRNA:   3'- cUCGUCGGGUA--GGUGUUGa------UGUACUg -5'
31018 5' -52 NC_006560.1 + 14637 0.7 0.886746
Target:  5'- cGGGCGGCaCggCCGCAACacCAUGACg -3'
miRNA:   3'- -CUCGUCGgGuaGGUGUUGauGUACUG- -5'
31018 5' -52 NC_006560.1 + 68182 0.7 0.871891
Target:  5'- cGGCGcGCCCAUCCGCGug-GCG-GACg -3'
miRNA:   3'- cUCGU-CGGGUAGGUGUugaUGUaCUG- -5'
31018 5' -52 NC_006560.1 + 35239 0.7 0.871891
Target:  5'- cGGCGGCCgCcgCCGCAcCUGCggGGCc -3'
miRNA:   3'- cUCGUCGG-GuaGGUGUuGAUGuaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.