miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31019 3' -55.7 NC_006560.1 + 97173 0.66 0.898388
Target:  5'- ------gUCGCGCgucgacCUCGCGGACUGCg -3'
miRNA:   3'- uauauuuGGCGCGa-----GGGCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 122549 0.66 0.898388
Target:  5'- ---cGGGCCGgGUUCUCGCGGugGCgACu -3'
miRNA:   3'- uauaUUUGGCgCGAGGGCGCC--UGgUG- -5'
31019 3' -55.7 NC_006560.1 + 10320 0.66 0.898388
Target:  5'- -----cGCCGCGa-CCCGCGGcCCGa -3'
miRNA:   3'- uauauuUGGCGCgaGGGCGCCuGGUg -5'
31019 3' -55.7 NC_006560.1 + 34723 0.66 0.898388
Target:  5'- ---cGGGCCGgggguCGCUCgCCGCGGcggcCCGCg -3'
miRNA:   3'- uauaUUUGGC-----GCGAG-GGCGCCu---GGUG- -5'
31019 3' -55.7 NC_006560.1 + 72354 0.66 0.898388
Target:  5'- gGUGUGGGgCGCgGCcCUCGCGGgggcGCCGCu -3'
miRNA:   3'- -UAUAUUUgGCG-CGaGGGCGCC----UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 75510 0.66 0.898388
Target:  5'- ---cGAGCUGCGCcgCCUGCaGGcgcugGCCGCa -3'
miRNA:   3'- uauaUUUGGCGCGa-GGGCG-CC-----UGGUG- -5'
31019 3' -55.7 NC_006560.1 + 79463 0.66 0.897733
Target:  5'- -cGUGAGCCcccggcgGCGCgugagcccCCCGCGGcgcCCGCg -3'
miRNA:   3'- uaUAUUUGG-------CGCGa-------GGGCGCCu--GGUG- -5'
31019 3' -55.7 NC_006560.1 + 84349 0.66 0.895752
Target:  5'- ---cGAGCgGCGCgccucccggcucgCCCG-GGACCGCc -3'
miRNA:   3'- uauaUUUGgCGCGa------------GGGCgCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 8884 0.66 0.891727
Target:  5'- ---gAGGCgggGgGCUUCgCGCGGGCCACg -3'
miRNA:   3'- uauaUUUGg--CgCGAGG-GCGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 67074 0.66 0.891727
Target:  5'- ---aGGGCgGgGCUgCCCGCGGcGCCAg -3'
miRNA:   3'- uauaUUUGgCgCGA-GGGCGCC-UGGUg -5'
31019 3' -55.7 NC_006560.1 + 18361 0.66 0.891727
Target:  5'- ----uGGCCGCGCcCCUGaUGGACCu- -3'
miRNA:   3'- uauauUUGGCGCGaGGGC-GCCUGGug -5'
31019 3' -55.7 NC_006560.1 + 22192 0.66 0.891727
Target:  5'- cGUcgGGGCCGCcgUCgCCGCGGcCCGCc -3'
miRNA:   3'- -UAuaUUUGGCGcgAG-GGCGCCuGGUG- -5'
31019 3' -55.7 NC_006560.1 + 24124 0.66 0.891727
Target:  5'- -----cGCCGCGCgccgCCCG-GGcCCGCc -3'
miRNA:   3'- uauauuUGGCGCGa---GGGCgCCuGGUG- -5'
31019 3' -55.7 NC_006560.1 + 27445 0.66 0.891727
Target:  5'- ------uCCGCGUccUCCCGCGGcGCC-Cg -3'
miRNA:   3'- uauauuuGGCGCG--AGGGCGCC-UGGuG- -5'
31019 3' -55.7 NC_006560.1 + 75107 0.66 0.891727
Target:  5'- ----cGAUCGCGCggcucggggcCCUGgGGGCCGCg -3'
miRNA:   3'- uauauUUGGCGCGa---------GGGCgCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 143061 0.66 0.891727
Target:  5'- -----cGCCGCGCgUCCC-CGGugCGa -3'
miRNA:   3'- uauauuUGGCGCG-AGGGcGCCugGUg -5'
31019 3' -55.7 NC_006560.1 + 2631 0.66 0.891048
Target:  5'- -gGUAGACguggcggCGCGCgacgacgggCCCgucgGCGGGCCACu -3'
miRNA:   3'- uaUAUUUG-------GCGCGa--------GGG----CGCCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 138964 0.66 0.885532
Target:  5'- ----uGACCGCGCgcagcuggucgcgcaCCCGCgucgcgucGGGCCGCu -3'
miRNA:   3'- uauauUUGGCGCGa--------------GGGCG--------CCUGGUG- -5'
31019 3' -55.7 NC_006560.1 + 107514 0.66 0.884831
Target:  5'- -----cGCCGCgGCcCUCGCGGGCCu- -3'
miRNA:   3'- uauauuUGGCG-CGaGGGCGCCUGGug -5'
31019 3' -55.7 NC_006560.1 + 43634 0.66 0.884831
Target:  5'- -gGUAGGCggccagcacgCGCGC-CUCGUGGugCACg -3'
miRNA:   3'- uaUAUUUG----------GCGCGaGGGCGCCugGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.