miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31019 5' -64.9 NC_006560.1 + 10914 0.67 0.430691
Target:  5'- aCGcCGGCCGCcgccggCGGCgccuuaaauggccCCCGCG-CCAg -3'
miRNA:   3'- aGC-GCCGGCGa-----GCCGa------------GGGCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 13605 0.69 0.34749
Target:  5'- aUCGgGGCuCGCUCGcGCcagggCCCG-GUCCGc -3'
miRNA:   3'- -AGCgCCG-GCGAGC-CGa----GGGCgCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 14619 0.69 0.333137
Target:  5'- gCGCGGCC-CUCGGg-CCCGCGggCGg -3'
miRNA:   3'- aGCGCCGGcGAGCCgaGGGCGCagGU- -5'
31019 5' -64.9 NC_006560.1 + 17800 0.67 0.434054
Target:  5'- cUC-CGGCCGCcCGGCUUCCucggucGCGcCCGc -3'
miRNA:   3'- -AGcGCCGGCGaGCCGAGGG------CGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 18041 0.69 0.333137
Target:  5'- gCGCGGCCGC-CGGgaCCCaagGUCCc -3'
miRNA:   3'- aGCGCCGGCGaGCCgaGGGcg-CAGGu -5'
31019 5' -64.9 NC_006560.1 + 18104 0.69 0.362281
Target:  5'- -gGCGGUCGC--GGCgUUCUGCGUCCGg -3'
miRNA:   3'- agCGCCGGCGagCCG-AGGGCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 18340 0.67 0.468494
Target:  5'- gCGCGGCCGaccugCGGCgcguggCCGCGcCCc -3'
miRNA:   3'- aGCGCCGGCga---GCCGag----GGCGCaGGu -5'
31019 5' -64.9 NC_006560.1 + 18419 0.69 0.377503
Target:  5'- cUGCGGCUGCgaccCGGC-CgCCGCGgCCGg -3'
miRNA:   3'- aGCGCCGGCGa---GCCGaG-GGCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 18496 0.67 0.477323
Target:  5'- aCGCcGCCGC-CuGCUUCCGCGcCCu -3'
miRNA:   3'- aGCGcCGGCGaGcCGAGGGCGCaGGu -5'
31019 5' -64.9 NC_006560.1 + 18824 0.69 0.369078
Target:  5'- aCGCGGgUGCgucgggCGGCUCcgcgaggCCGCGUCUc -3'
miRNA:   3'- aGCGCCgGCGa-----GCCGAG-------GGCGCAGGu -5'
31019 5' -64.9 NC_006560.1 + 19420 0.74 0.160916
Target:  5'- cCGCGGCggCGCUCGGCUgagCUgGUGUCCGc -3'
miRNA:   3'- aGCGCCG--GCGAGCCGA---GGgCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 19589 0.67 0.434054
Target:  5'- cCGCGGcCCGCUCGucgucggaggcaGaCUCCagggugGCGUCCGa -3'
miRNA:   3'- aGCGCC-GGCGAGC------------C-GAGGg-----CGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 22193 0.68 0.401129
Target:  5'- gUCGgGGCCGCcgucgccgCGGCccgccCCCGCGgccCCGg -3'
miRNA:   3'- -AGCgCCGGCGa-------GCCGa----GGGCGCa--GGU- -5'
31019 5' -64.9 NC_006560.1 + 22725 0.68 0.409211
Target:  5'- uUCaCGGCCGCgCGGCcgcggCCCGUGcCCc -3'
miRNA:   3'- -AGcGCCGGCGaGCCGa----GGGCGCaGGu -5'
31019 5' -64.9 NC_006560.1 + 22933 0.66 0.495221
Target:  5'- aCGaGGCCGC-CGGCgcgCCCGCc-CCGu -3'
miRNA:   3'- aGCgCCGGCGaGCCGa--GGGCGcaGGU- -5'
31019 5' -64.9 NC_006560.1 + 23600 0.67 0.449373
Target:  5'- gCGCGcGCCGCggucccgccgcgCGGCgccgccgcgCCCGCG-CCGc -3'
miRNA:   3'- aGCGC-CGGCGa-----------GCCGa--------GGGCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 23916 0.67 0.450233
Target:  5'- gCGCGGCCcgcaagcgcaagaGCUccucgcccccgCGGCgCCCGCGcCCGc -3'
miRNA:   3'- aGCGCCGG-------------CGA-----------GCCGaGGGCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 24111 0.67 0.451094
Target:  5'- cCGCGGCgGCU-GGCgCCgCGCG-CCGc -3'
miRNA:   3'- aGCGCCGgCGAgCCGaGG-GCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 24279 0.67 0.468494
Target:  5'- cUCGCuGGCCGCgcgcugCGGCccgCCCGag-CCGg -3'
miRNA:   3'- -AGCG-CCGGCGa-----GCCGa--GGGCgcaGGU- -5'
31019 5' -64.9 NC_006560.1 + 25070 0.69 0.354831
Target:  5'- -gGCGGCCGCcgcCGGCgcgCCCGaCuUCCGc -3'
miRNA:   3'- agCGCCGGCGa--GCCGa--GGGC-GcAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.