miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31019 5' -64.9 NC_006560.1 + 110605 1.07 0.00065
Target:  5'- gUCGCGGCCGCUCGGCUCCCGCGUCCAc -3'
miRNA:   3'- -AGCGCCGGCGAGCCGAGGGCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 10255 0.77 0.098512
Target:  5'- gUCGCGGCgGCcccggccUCGGCUCCCGCccccUCCGc -3'
miRNA:   3'- -AGCGCCGgCG-------AGCCGAGGGCGc---AGGU- -5'
31019 5' -64.9 NC_006560.1 + 128836 0.77 0.103776
Target:  5'- aCGCGGCCGCggcgCGgaGCUCgCGCGUCUAc -3'
miRNA:   3'- aGCGCCGGCGa---GC--CGAGgGCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 1922 0.76 0.120307
Target:  5'- -gGCGGCCGC-CGGCUCgC-CGUCCGg -3'
miRNA:   3'- agCGCCGGCGaGCCGAGgGcGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 105502 0.76 0.12329
Target:  5'- cCGCGGCCGC---GCUCCUGCGcUCCAg -3'
miRNA:   3'- aGCGCCGGCGagcCGAGGGCGC-AGGU- -5'
31019 5' -64.9 NC_006560.1 + 7941 0.76 0.12329
Target:  5'- uUCGUGGCgGCgcuGGCgcCCCGCGUCCGg -3'
miRNA:   3'- -AGCGCCGgCGag-CCGa-GGGCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 66904 0.76 0.126342
Target:  5'- gCGCGGCgUGCUCGGCg-CCGCcGUCCGc -3'
miRNA:   3'- aGCGCCG-GCGAGCCGagGGCG-CAGGU- -5'
31019 5' -64.9 NC_006560.1 + 104922 0.75 0.142674
Target:  5'- cCGgGaGCCGCUCgucgGGCUCCCcggGCGUCCGu -3'
miRNA:   3'- aGCgC-CGGCGAG----CCGAGGG---CGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 121832 0.75 0.146164
Target:  5'- aUCGCGGagGCggGGCgcgcgCCCGCGUCCAc -3'
miRNA:   3'- -AGCGCCggCGagCCGa----GGGCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 35126 0.75 0.157107
Target:  5'- cCGgGGuCCGCUcgggagaggcCGGCggCCCGCGUCCGa -3'
miRNA:   3'- aGCgCC-GGCGA----------GCCGa-GGGCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 93660 0.75 0.157107
Target:  5'- cCGCGGCU--UCGGCUCCgGCGUCg- -3'
miRNA:   3'- aGCGCCGGcgAGCCGAGGgCGCAGgu -5'
31019 5' -64.9 NC_006560.1 + 36598 0.74 0.160147
Target:  5'- cUGUGaGCCGCUCGGaucugcgucugCCCGCGUCCc -3'
miRNA:   3'- aGCGC-CGGCGAGCCga---------GGGCGCAGGu -5'
31019 5' -64.9 NC_006560.1 + 19420 0.74 0.160916
Target:  5'- cCGCGGCggCGCUCGGCUgagCUgGUGUCCGc -3'
miRNA:   3'- aGCGCCG--GCGAGCCGA---GGgCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 41838 0.73 0.199093
Target:  5'- cUGUGGCCGUg-GGCguacacgCCCGUGUCCAc -3'
miRNA:   3'- aGCGCCGGCGagCCGa------GGGCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 39170 0.73 0.203791
Target:  5'- gCGgGGCCGCcccccgUCGGCcCCCGCGcCCc -3'
miRNA:   3'- aGCgCCGGCG------AGCCGaGGGCGCaGGu -5'
31019 5' -64.9 NC_006560.1 + 120455 0.73 0.203791
Target:  5'- cCGUGGUgcUGCUCGGCUccaCCCGCGggCCGc -3'
miRNA:   3'- aGCGCCG--GCGAGCCGA---GGGCGCa-GGU- -5'
31019 5' -64.9 NC_006560.1 + 35267 0.73 0.208585
Target:  5'- gCGCGGCCGCcgcgccgggCGGCggggCCCGgGgUCCGg -3'
miRNA:   3'- aGCGCCGGCGa--------GCCGa---GGGCgC-AGGU- -5'
31019 5' -64.9 NC_006560.1 + 51247 0.73 0.213476
Target:  5'- gCGCGcGCCugcacccgcGCUCGGCgcacCCCGCGcUCCGg -3'
miRNA:   3'- aGCGC-CGG---------CGAGCCGa---GGGCGC-AGGU- -5'
31019 5' -64.9 NC_006560.1 + 4760 0.72 0.218466
Target:  5'- cCGCGGCgGCggCGGCgcggggUCCGgGUCCGa -3'
miRNA:   3'- aGCGCCGgCGa-GCCGa-----GGGCgCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 4056 0.72 0.223554
Target:  5'- gCGcCGGCCGCggCGGCguUCUCGCGcgCCAg -3'
miRNA:   3'- aGC-GCCGGCGa-GCCG--AGGGCGCa-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.