miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31019 5' -64.9 NC_006560.1 + 51523 0.66 0.522618
Target:  5'- gCGCGGCgGCgcgCGcGCUCCUggccgGCGcCCu -3'
miRNA:   3'- aGCGCCGgCGa--GC-CGAGGG-----CGCaGGu -5'
31019 5' -64.9 NC_006560.1 + 73473 0.66 0.522618
Target:  5'- gCGCGGCUGUccgagUGGCUCCuggagcgcuCGCGggCCGg -3'
miRNA:   3'- aGCGCCGGCGa----GCCGAGG---------GCGCa-GGU- -5'
31019 5' -64.9 NC_006560.1 + 134209 0.66 0.522618
Target:  5'- gCGCGGgcCCGCggggUCGGC-CCCGCccgCCGc -3'
miRNA:   3'- aGCGCC--GGCG----AGCCGaGGGCGca-GGU- -5'
31019 5' -64.9 NC_006560.1 + 138971 0.66 0.522618
Target:  5'- gCGCaGCUGgUCGcGCaCCCGCGUCg- -3'
miRNA:   3'- aGCGcCGGCgAGC-CGaGGGCGCAGgu -5'
31019 5' -64.9 NC_006560.1 + 142565 0.66 0.522618
Target:  5'- aCGCgGGCCGC-CGGCcucUCCCgaGCGgaccCCGg -3'
miRNA:   3'- aGCG-CCGGCGaGCCG---AGGG--CGCa---GGU- -5'
31019 5' -64.9 NC_006560.1 + 149883 0.66 0.522618
Target:  5'- cCcCGGCCGCggaagGGC-CCCGCGcgCCGa -3'
miRNA:   3'- aGcGCCGGCGag---CCGaGGGCGCa-GGU- -5'
31019 5' -64.9 NC_006560.1 + 144110 0.66 0.522618
Target:  5'- cCGcCGGCCccuGCcUGGCUCCgGCGgCCGc -3'
miRNA:   3'- aGC-GCCGG---CGaGCCGAGGgCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 442 0.66 0.513417
Target:  5'- cCGCGGCCuCcgCGGcCUCCCcgGCGggcggCCAg -3'
miRNA:   3'- aGCGCCGGcGa-GCC-GAGGG--CGCa----GGU- -5'
31019 5' -64.9 NC_006560.1 + 70437 0.66 0.513417
Target:  5'- cUCaCGGCCGCccUGGCgggCCUGCGggCCGc -3'
miRNA:   3'- -AGcGCCGGCGa-GCCGa--GGGCGCa-GGU- -5'
31019 5' -64.9 NC_006560.1 + 124488 0.66 0.513417
Target:  5'- gCGCGGCCGCcgccgaccccCGGC-CCCucaugGCGUUCu -3'
miRNA:   3'- aGCGCCGGCGa---------GCCGaGGG-----CGCAGGu -5'
31019 5' -64.9 NC_006560.1 + 66468 0.66 0.513417
Target:  5'- cCGCaGGCa-CUCGGC-CagCGCGUCCAg -3'
miRNA:   3'- aGCG-CCGgcGAGCCGaGg-GCGCAGGU- -5'
31019 5' -64.9 NC_006560.1 + 88695 0.66 0.513417
Target:  5'- cCGCGGCCgGCggCGGCagagCgCCGC-UCCGc -3'
miRNA:   3'- aGCGCCGG-CGa-GCCGa---G-GGCGcAGGU- -5'
31019 5' -64.9 NC_006560.1 + 106690 0.66 0.513417
Target:  5'- gCGCGGCCGC-CGGagccucCUCCuCGCcacggCCAu -3'
miRNA:   3'- aGCGCCGGCGaGCC------GAGG-GCGca---GGU- -5'
31019 5' -64.9 NC_006560.1 + 144509 0.66 0.513417
Target:  5'- cCGCGGCCGCcuuccccgCgGGCcccuucCCCGCGgCCGc -3'
miRNA:   3'- aGCGCCGGCGa-------G-CCGa-----GGGCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 30693 0.66 0.504283
Target:  5'- cCGUGGCCcCggUGGC-CCCGCGgCCGc -3'
miRNA:   3'- aGCGCCGGcGa-GCCGaGGGCGCaGGU- -5'
31019 5' -64.9 NC_006560.1 + 39668 0.66 0.504283
Target:  5'- cCGCGGCCGCgccccgGGCcgcCCCGcCGcCCu -3'
miRNA:   3'- aGCGCCGGCGag----CCGa--GGGC-GCaGGu -5'
31019 5' -64.9 NC_006560.1 + 130314 0.66 0.504283
Target:  5'- gCGCGGUgGCggCGGCgcgggCCgCGgCGUCCc -3'
miRNA:   3'- aGCGCCGgCGa-GCCGa----GG-GC-GCAGGu -5'
31019 5' -64.9 NC_006560.1 + 81098 0.66 0.495221
Target:  5'- gUUGaCGGCCaGCaCGaGCUCCCGCaUCCc -3'
miRNA:   3'- -AGC-GCCGG-CGaGC-CGAGGGCGcAGGu -5'
31019 5' -64.9 NC_006560.1 + 66376 0.66 0.495221
Target:  5'- aCGCuGGCCaGCUCG--UCCUGCGUCa- -3'
miRNA:   3'- aGCG-CCGG-CGAGCcgAGGGCGCAGgu -5'
31019 5' -64.9 NC_006560.1 + 57401 0.66 0.495221
Target:  5'- cCGCGGCCaGCgCGGCcgCCCcgGCGaCCu -3'
miRNA:   3'- aGCGCCGG-CGaGCCGa-GGG--CGCaGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.