Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3102 | 3' | -59.4 | NC_001493.1 | + | 76957 | 0.67 | 0.646042 |
Target: 5'- gGUCAUCuGGAGGCCCUGAagcccgucacguGGGc-- -3' miRNA: 3'- -CAGUAGuCCUCCGGGGCUgu----------CCCaca -5' |
|||||||
3102 | 3' | -59.4 | NC_001493.1 | + | 13201 | 0.68 | 0.609523 |
Target: 5'- --gGUCAGGAGa-CCCGACAGGGc-- -3' miRNA: 3'- cagUAGUCCUCcgGGGCUGUCCCaca -5' |
|||||||
3102 | 3' | -59.4 | NC_001493.1 | + | 128755 | 0.68 | 0.609523 |
Target: 5'- --gGUCAGGAGa-CCCGACAGGGc-- -3' miRNA: 3'- cagUAGUCCUCcgGGGCUGUCCCaca -5' |
|||||||
3102 | 3' | -59.4 | NC_001493.1 | + | 93239 | 1.07 | 0.00156 |
Target: 5'- gGUCAUCAGGAGGCCCCGACAGGGUGUg -3' miRNA: 3'- -CAGUAGUCCUCCGGGGCUGUCCCACA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home