miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3102 5' -48.7 NC_001493.1 + 87980 0.66 0.998334
Target:  5'- -uACCCCCCGgGGc----GUACGAGg -3'
miRNA:   3'- cuUGGGGGGUgCCuauuaUAUGCUUa -5'
3102 5' -48.7 NC_001493.1 + 79782 0.66 0.997991
Target:  5'- cGAGCCCCCaugucaccaCGCGGG--GUGUgACGGAg -3'
miRNA:   3'- -CUUGGGGG---------GUGCCUauUAUA-UGCUUa -5'
3102 5' -48.7 NC_001493.1 + 90435 0.66 0.997991
Target:  5'- aGAACCCCCgaaGCGuGcAUAAUGUACa--- -3'
miRNA:   3'- -CUUGGGGGg--UGC-C-UAUUAUAUGcuua -5'
3102 5' -48.7 NC_001493.1 + 123685 0.66 0.99759
Target:  5'- aGAGCCCgaCCCGCGGc--GUGgACGAAg -3'
miRNA:   3'- -CUUGGG--GGGUGCCuauUAUaUGCUUa -5'
3102 5' -48.7 NC_001493.1 + 8130 0.66 0.99759
Target:  5'- aGAGCCCgaCCCGCGGc--GUGgACGAAg -3'
miRNA:   3'- -CUUGGG--GGGUGCCuauUAUaUGCUUa -5'
3102 5' -48.7 NC_001493.1 + 87938 0.66 0.997124
Target:  5'- -uGCCCCCCGgGGc----GUACGAGg -3'
miRNA:   3'- cuUGGGGGGUgCCuauuaUAUGCUUa -5'
3102 5' -48.7 NC_001493.1 + 105462 0.66 0.997124
Target:  5'- -uACCCCCCGUGGGUcgugGUACaGAAUg -3'
miRNA:   3'- cuUGGGGGGUGCCUAuua-UAUG-CUUA- -5'
3102 5' -48.7 NC_001493.1 + 44422 0.66 0.997124
Target:  5'- cGAugUCCgCgGCgGGGUAGUAUGCGAc- -3'
miRNA:   3'- -CUugGGG-GgUG-CCUAUUAUAUGCUua -5'
3102 5' -48.7 NC_001493.1 + 118696 0.67 0.995968
Target:  5'- cGACCaUCCGCGGGUucgGUGCGGAc -3'
miRNA:   3'- cUUGGgGGGUGCCUAuuaUAUGCUUa -5'
3102 5' -48.7 NC_001493.1 + 3142 0.67 0.995968
Target:  5'- cGACCaUCCGCGGGUucgGUGCGGAc -3'
miRNA:   3'- cUUGGgGGGUGCCUAuuaUAUGCUUa -5'
3102 5' -48.7 NC_001493.1 + 75879 0.67 0.994455
Target:  5'- cGAACCCCCCucuccucgGGAUGGUcu-CGggUg -3'
miRNA:   3'- -CUUGGGGGGug------CCUAUUAuauGCuuA- -5'
3102 5' -48.7 NC_001493.1 + 82981 0.67 0.992515
Target:  5'- cGGCUCCCCACuGAgggaAUGCGAGUa -3'
miRNA:   3'- cUUGGGGGGUGcCUauuaUAUGCUUA- -5'
3102 5' -48.7 NC_001493.1 + 109974 0.67 0.992515
Target:  5'- cGAACCCCCCgugcaauugcaGCGGAggg-GUGCa--- -3'
miRNA:   3'- -CUUGGGGGG-----------UGCCUauuaUAUGcuua -5'
3102 5' -48.7 NC_001493.1 + 92298 0.67 0.992515
Target:  5'- gGAugCCCCCGUGGuuu-UAUACGAc- -3'
miRNA:   3'- -CUugGGGGGUGCCuauuAUAUGCUua -5'
3102 5' -48.7 NC_001493.1 + 90077 0.69 0.97637
Target:  5'- cGAGCuCCCCCAgaGGGUGGUAgcCGAc- -3'
miRNA:   3'- -CUUG-GGGGGUg-CCUAUUAUauGCUua -5'
3102 5' -48.7 NC_001493.1 + 37437 0.7 0.970663
Target:  5'- aGGACCUugCCCAUGGGgaucugGUGCGAGUa -3'
miRNA:   3'- -CUUGGG--GGGUGCCUauua--UAUGCUUA- -5'
3102 5' -48.7 NC_001493.1 + 68447 0.7 0.967466
Target:  5'- cGAugCCUUCACGGGUGcgAaGCGAAc -3'
miRNA:   3'- -CUugGGGGGUGCCUAUuaUaUGCUUa -5'
3102 5' -48.7 NC_001493.1 + 134072 0.7 0.958806
Target:  5'- cGGGCCCCUCACGGuggccacGCGggUg -3'
miRNA:   3'- -CUUGGGGGGUGCCuauuauaUGCuuA- -5'
3102 5' -48.7 NC_001493.1 + 18517 0.7 0.958806
Target:  5'- cGGGCCCCUCACGGuggccacGCGggUg -3'
miRNA:   3'- -CUUGGGGGGUGCCuauuauaUGCuuA- -5'
3102 5' -48.7 NC_001493.1 + 109476 0.71 0.93806
Target:  5'- --uCCCCCCGCGGGUuuccucacAUGCGAc- -3'
miRNA:   3'- cuuGGGGGGUGCCUAuua-----UAUGCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.