miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 3' -59.7 NC_006560.1 + 146758 0.67 0.747839
Target:  5'- -----cUGGgCCCGGGucuGGGCCCGCGc -3'
miRNA:   3'- ccuaaaGCCaGGGCCC---CCUGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 92383 0.67 0.747839
Target:  5'- cGGcg--CGGcCCUGGaggccGGGGCCCGCGc -3'
miRNA:   3'- -CCuaaaGCCaGGGCC-----CCCUGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 147917 0.67 0.738529
Target:  5'- cGGGgg-CGGgggaGaGGGGGCCCGCGGc -3'
miRNA:   3'- -CCUaaaGCCagggC-CCCCUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 28216 0.67 0.738529
Target:  5'- gGGAgcgUCGG-CCCGGGccgccGGccgucugccGCCUGCGAu -3'
miRNA:   3'- -CCUaa-AGCCaGGGCCC-----CC---------UGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 13383 0.67 0.738529
Target:  5'- -----cCGGgccgCCuCGGGGGcCCCGCGc -3'
miRNA:   3'- ccuaaaGCCa---GG-GCCCCCuGGGCGCu -5'
31020 3' -59.7 NC_006560.1 + 33632 0.67 0.729133
Target:  5'- gGGGgggCGGggggCgCCGGGGGcGgCCGCGGg -3'
miRNA:   3'- -CCUaaaGCCa---G-GGCCCCC-UgGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 39403 0.67 0.729133
Target:  5'- ----cUCGGgCUCGGGGG-CgCCGCGGc -3'
miRNA:   3'- ccuaaAGCCaGGGCCCCCuG-GGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 17681 0.67 0.729133
Target:  5'- cGGGcgccgUGGggCCCGGGGGGgUCGUGGg -3'
miRNA:   3'- -CCUaaa--GCCa-GGGCCCCCUgGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 120092 0.67 0.729133
Target:  5'- cGGA----GGUCCCcGGGGACCCcucgGCGu -3'
miRNA:   3'- -CCUaaagCCAGGGcCCCCUGGG----CGCu -5'
31020 3' -59.7 NC_006560.1 + 46054 0.67 0.71966
Target:  5'- -----cCGGagaUCCaGGGGGACCCGCc- -3'
miRNA:   3'- ccuaaaGCC---AGGgCCCCCUGGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 10296 0.68 0.710118
Target:  5'- aGGGgg-CGGgccgCCGGGGaccgccgccgcGACCCGCGGc -3'
miRNA:   3'- -CCUaaaGCCag--GGCCCC-----------CUGGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 68103 0.68 0.710118
Target:  5'- ------aGGcCCCGGGGGACgCGgGGg -3'
miRNA:   3'- ccuaaagCCaGGGCCCCCUGgGCgCU- -5'
31020 3' -59.7 NC_006560.1 + 148623 0.68 0.710118
Target:  5'- uGGGgg-CGGUCCCcgacGGGcGGGcCCCGCc- -3'
miRNA:   3'- -CCUaaaGCCAGGG----CCC-CCU-GGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 116425 0.68 0.710118
Target:  5'- gGGGUagagcaccgCGccCCCGGGGGGCUCGCa- -3'
miRNA:   3'- -CCUAaa-------GCcaGGGCCCCCUGGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 145230 0.68 0.700515
Target:  5'- -----cUGGcgcCCCGGGGGAgCCCGCa- -3'
miRNA:   3'- ccuaaaGCCa--GGGCCCCCU-GGGCGcu -5'
31020 3' -59.7 NC_006560.1 + 28179 0.68 0.700515
Target:  5'- gGGGUgagucggUGGUCCCGGGccggcGGCCCggGCGGg -3'
miRNA:   3'- -CCUAaa-----GCCAGGGCCCc----CUGGG--CGCU- -5'
31020 3' -59.7 NC_006560.1 + 140326 0.68 0.700515
Target:  5'- gGGAgucaaaGGUcacCCCGGcGGGAcagcCCCGCGGg -3'
miRNA:   3'- -CCUaaag--CCA---GGGCC-CCCU----GGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 133941 0.68 0.700515
Target:  5'- uGAUgucguagUCGG-CCCGGGGGucgucgggGgCCGCGGc -3'
miRNA:   3'- cCUAa------AGCCaGGGCCCCC--------UgGGCGCU- -5'
31020 3' -59.7 NC_006560.1 + 8863 0.68 0.699551
Target:  5'- cGGggUCGGUCUggggugggggaggCGGGGGGCUucgCGCGGg -3'
miRNA:   3'- cCUaaAGCCAGG-------------GCCCCCUGG---GCGCU- -5'
31020 3' -59.7 NC_006560.1 + 50929 0.68 0.694727
Target:  5'- aGGccuccgCGGUCCCccugcuggcgacccGGGGACUCGCGGc -3'
miRNA:   3'- -CCuaaa--GCCAGGGc-------------CCCCUGGGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.