miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31020 5' -57.7 NC_006560.1 + 65559 0.66 0.826292
Target:  5'- aCGCCGG-GGCGCUUCuuuauGGACGGGc-- -3'
miRNA:   3'- -GCGGUUaCCGCGAGGc----CCUGCUCuau -5'
31020 5' -57.7 NC_006560.1 + 105022 0.66 0.825451
Target:  5'- gCGCgGAacgGGCGCUCCGcGGcgccgccGCGGGGg- -3'
miRNA:   3'- -GCGgUUa--CCGCGAGGC-CC-------UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 12686 0.66 0.825451
Target:  5'- gCGCCGAcgaUGGCGC-CCguguggucggcggGGGugGGGGc- -3'
miRNA:   3'- -GCGGUU---ACCGCGaGG-------------CCCugCUCUau -5'
31020 5' -57.7 NC_006560.1 + 33803 0.66 0.8178
Target:  5'- aGUCGcgGGCGCggaCGGGggGCGGGGg- -3'
miRNA:   3'- gCGGUuaCCGCGag-GCCC--UGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 45255 0.66 0.8178
Target:  5'- gCGUCuGUGGCGCgUgCGGGG-GAGGUGc -3'
miRNA:   3'- -GCGGuUACCGCG-AgGCCCUgCUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 117687 0.66 0.8178
Target:  5'- uGCCGcgGGaCGCgCUGGGG-GAGGUAc -3'
miRNA:   3'- gCGGUuaCC-GCGaGGCCCUgCUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 121991 0.66 0.8178
Target:  5'- gGCCGc-GGUGUaCCGGGAgGAGAc- -3'
miRNA:   3'- gCGGUuaCCGCGaGGCCCUgCUCUau -5'
31020 5' -57.7 NC_006560.1 + 108064 0.66 0.8178
Target:  5'- uCGCUcccgAcgGGCaGUUcCCGGGGCGGGAg- -3'
miRNA:   3'- -GCGG----UuaCCG-CGA-GGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 8840 0.66 0.809141
Target:  5'- gGCCGcgGGgGUUCCaugucGGGCGGGGUc -3'
miRNA:   3'- gCGGUuaCCgCGAGGc----CCUGCUCUAu -5'
31020 5' -57.7 NC_006560.1 + 20059 0.66 0.809141
Target:  5'- aGCCAucggGGCGUUCCgacgGGGGCGGc--- -3'
miRNA:   3'- gCGGUua--CCGCGAGG----CCCUGCUcuau -5'
31020 5' -57.7 NC_006560.1 + 41583 0.66 0.809141
Target:  5'- uGCuCGAUGGCGUUgUGGGACGc---- -3'
miRNA:   3'- gCG-GUUACCGCGAgGCCCUGCucuau -5'
31020 5' -57.7 NC_006560.1 + 44340 0.66 0.809141
Target:  5'- gGCUGGggGGCGCgcccCCGGGAgcaauaUGAGAUGg -3'
miRNA:   3'- gCGGUUa-CCGCGa---GGCCCU------GCUCUAU- -5'
31020 5' -57.7 NC_006560.1 + 87866 0.66 0.809141
Target:  5'- gGCCGcgGUGGgGCg-CGGGugGGGGg- -3'
miRNA:   3'- gCGGU--UACCgCGagGCCCugCUCUau -5'
31020 5' -57.7 NC_006560.1 + 94961 0.67 0.800324
Target:  5'- gCGCCGcgugcUGGCGCgcaUCgGGGGCGGGc-- -3'
miRNA:   3'- -GCGGUu----ACCGCG---AGgCCCUGCUCuau -5'
31020 5' -57.7 NC_006560.1 + 135473 0.67 0.800324
Target:  5'- aGCCGccGGUGCccucggcccgguUUCGGGAUGAGGc- -3'
miRNA:   3'- gCGGUuaCCGCG------------AGGCCCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 15327 0.67 0.799433
Target:  5'- gCGCCGGUcccguucgcggccGGCGCggCCGGGGuCGcGGUGa -3'
miRNA:   3'- -GCGGUUA-------------CCGCGa-GGCCCU-GCuCUAU- -5'
31020 5' -57.7 NC_006560.1 + 116580 0.67 0.791356
Target:  5'- cCGCCAcgcGGaCGCUgcggaacacccCCGGGugGAGGg- -3'
miRNA:   3'- -GCGGUua-CC-GCGA-----------GGCCCugCUCUau -5'
31020 5' -57.7 NC_006560.1 + 137154 0.67 0.782246
Target:  5'- aGCUccUGGCGCU-CGGGGCgGAGGg- -3'
miRNA:   3'- gCGGuuACCGCGAgGCCCUG-CUCUau -5'
31020 5' -57.7 NC_006560.1 + 96141 0.67 0.773004
Target:  5'- cCGCCAcgcccGCGCUucCCGaGGACGAGGa- -3'
miRNA:   3'- -GCGGUuac--CGCGA--GGC-CCUGCUCUau -5'
31020 5' -57.7 NC_006560.1 + 76900 0.67 0.773004
Target:  5'- cCGCCAcgacGGCcuccucgcccGcCUCCGGGAgGAGGUGg -3'
miRNA:   3'- -GCGGUua--CCG----------C-GAGGCCCUgCUCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.