miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31021 3' -62.1 NC_006560.1 + 1498 0.66 0.647554
Target:  5'- -gGCCCacGCCGGCgggaGCGCGU-GCaUCGGg -3'
miRNA:   3'- agCGGG--UGGCCGg---CGUGCAgCG-AGUC- -5'
31021 3' -62.1 NC_006560.1 + 18952 0.66 0.647554
Target:  5'- -gGCCCGgCGGgCGCcggGCGUCGCg--- -3'
miRNA:   3'- agCGGGUgGCCgGCG---UGCAGCGaguc -5'
31021 3' -62.1 NC_006560.1 + 48881 0.66 0.647554
Target:  5'- gCGCCCGucuCCGcggcgcGCCGCGCGa-GCUCAa -3'
miRNA:   3'- aGCGGGU---GGC------CGGCGUGCagCGAGUc -5'
31021 3' -62.1 NC_006560.1 + 52388 0.66 0.647554
Target:  5'- uUC-CUCACCGGCgccgCGCGCGcCGCgCAGc -3'
miRNA:   3'- -AGcGGGUGGCCG----GCGUGCaGCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 54081 0.66 0.647554
Target:  5'- cCGCCC-CCGGCCGC----CGC-CGGg -3'
miRNA:   3'- aGCGGGuGGCCGGCGugcaGCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 85050 0.66 0.647554
Target:  5'- -gGCCCACgugUGGCagaGCACGUuugUGCUCGu -3'
miRNA:   3'- agCGGGUG---GCCGg--CGUGCA---GCGAGUc -5'
31021 3' -62.1 NC_006560.1 + 131642 0.66 0.647554
Target:  5'- gCGCCCGC--GCCGCgcuggaggGCGUCGC-CGGc -3'
miRNA:   3'- aGCGGGUGgcCGGCG--------UGCAGCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 69842 0.66 0.641683
Target:  5'- aCGCCCugCgGGCCacguGCGCGccgccuaccuccccCGCUCGGu -3'
miRNA:   3'- aGCGGGugG-CCGG----CGUGCa-------------GCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 838 0.66 0.637767
Target:  5'- aCGCCCACgaGGCCccGCGCG-CGCcCGc -3'
miRNA:   3'- aGCGGGUGg-CCGG--CGUGCaGCGaGUc -5'
31021 3' -62.1 NC_006560.1 + 27789 0.66 0.637767
Target:  5'- aCGCCgCGcCCGGCCGC-CGUuccuucggCGCgCGGg -3'
miRNA:   3'- aGCGG-GU-GGCCGGCGuGCA--------GCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 88452 0.66 0.637767
Target:  5'- gCGCCCGCgGG-CGCGCGguccaCGC-CGGc -3'
miRNA:   3'- aGCGGGUGgCCgGCGUGCa----GCGaGUC- -5'
31021 3' -62.1 NC_006560.1 + 113312 0.66 0.637767
Target:  5'- -gGCCCACCcGCUGCAccccgcccaccuCGUCGC-CAa -3'
miRNA:   3'- agCGGGUGGcCGGCGU------------GCAGCGaGUc -5'
31021 3' -62.1 NC_006560.1 + 39067 0.66 0.637767
Target:  5'- aUCGCCgcggcgCugCGGCCGaACGUcucgcugacgCGCUCGGc -3'
miRNA:   3'- -AGCGG------GugGCCGGCgUGCA----------GCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 78147 0.66 0.637767
Target:  5'- gUGCCUGCCGagcGCCGCGCucGcCGCUCu- -3'
miRNA:   3'- aGCGGGUGGC---CGGCGUG--CaGCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 125089 0.66 0.637767
Target:  5'- aUCGCCCGgcCCGGCgUGCGCuacuUCGCcccgggUCAGg -3'
miRNA:   3'- -AGCGGGU--GGCCG-GCGUGc---AGCG------AGUC- -5'
31021 3' -62.1 NC_006560.1 + 142437 0.66 0.637767
Target:  5'- cCGCCCggcgcGgCGGCCGCGCGgcccCGCa--- -3'
miRNA:   3'- aGCGGG-----UgGCCGGCGUGCa---GCGaguc -5'
31021 3' -62.1 NC_006560.1 + 110313 0.66 0.627975
Target:  5'- gUCGCCCugUuggcGGCCGCGCaGgagaCGUUUGGg -3'
miRNA:   3'- -AGCGGGugG----CCGGCGUG-Ca---GCGAGUC- -5'
31021 3' -62.1 NC_006560.1 + 4051 0.66 0.627975
Target:  5'- gCGCggCGCCGGCCGCGgCGgCGUUCu- -3'
miRNA:   3'- aGCGg-GUGGCCGGCGU-GCaGCGAGuc -5'
31021 3' -62.1 NC_006560.1 + 134987 0.66 0.627975
Target:  5'- -nGUCCGCCaGGCCGCGCG-CGaagucCAGc -3'
miRNA:   3'- agCGGGUGG-CCGGCGUGCaGCga---GUC- -5'
31021 3' -62.1 NC_006560.1 + 41029 0.66 0.627975
Target:  5'- gCGCCgACgGGCCGCAC--CGCgUAGa -3'
miRNA:   3'- aGCGGgUGgCCGGCGUGcaGCGaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.