miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31021 5' -56.4 NC_006560.1 + 3674 0.66 0.857882
Target:  5'- cGCGGAGgUCGCcGCGCAgGc----- -3'
miRNA:   3'- aCGCCUCgAGCGaCGCGUgCaucaac -5'
31021 5' -56.4 NC_006560.1 + 4586 0.68 0.798868
Target:  5'- gGCGuAGCcgUCGCgguaGCGCGCGUAGa-- -3'
miRNA:   3'- aCGCcUCG--AGCGa---CGCGUGCAUCaac -5'
31021 5' -56.4 NC_006560.1 + 4714 0.76 0.357446
Target:  5'- gGCGGcGCUCGCUGCGCcCGgcGgcGa -3'
miRNA:   3'- aCGCCuCGAGCGACGCGuGCauCaaC- -5'
31021 5' -56.4 NC_006560.1 + 9099 0.73 0.480354
Target:  5'- gGCGGAGCgcgCGCgcgGCGCGCGg----- -3'
miRNA:   3'- aCGCCUCGa--GCGa--CGCGUGCaucaac -5'
31021 5' -56.4 NC_006560.1 + 11741 0.68 0.78976
Target:  5'- cGCGGGGCcCGCaGCGgCGCGUccgGGUc- -3'
miRNA:   3'- aCGCCUCGaGCGaCGC-GUGCA---UCAac -5'
31021 5' -56.4 NC_006560.1 + 18308 0.66 0.889962
Target:  5'- gGCGGAGCcccuggggacgcccgUCGUcgUGCGCGCGg----- -3'
miRNA:   3'- aCGCCUCG---------------AGCG--ACGCGUGCaucaac -5'
31021 5' -56.4 NC_006560.1 + 22331 0.74 0.424989
Target:  5'- cGCGGAGCUCGCggaGCuCGCGgcGggGg -3'
miRNA:   3'- aCGCCUCGAGCGa--CGcGUGCauCaaC- -5'
31021 5' -56.4 NC_006560.1 + 28265 0.72 0.529043
Target:  5'- -cCGGAGCUCGCUGUGCGCc------ -3'
miRNA:   3'- acGCCUCGAGCGACGCGUGcaucaac -5'
31021 5' -56.4 NC_006560.1 + 31834 0.72 0.539007
Target:  5'- gGUGGGGCUCGCcGCGCgACGcgcgGGggGg -3'
miRNA:   3'- aCGCCUCGAGCGaCGCG-UGCa---UCaaC- -5'
31021 5' -56.4 NC_006560.1 + 33781 0.72 0.559119
Target:  5'- cGCGGGGC-CGUgggGCGCGCGaAGUc- -3'
miRNA:   3'- aCGCCUCGaGCGa--CGCGUGCaUCAac -5'
31021 5' -56.4 NC_006560.1 + 33833 0.68 0.76161
Target:  5'- gGCGGGGgUCgGCcGCGgGCGUGGggGc -3'
miRNA:   3'- aCGCCUCgAG-CGaCGCgUGCAUCaaC- -5'
31021 5' -56.4 NC_006560.1 + 34636 0.66 0.887224
Target:  5'- cGCGGAGgUCGCaccgggGaCGCGCGgcGg-- -3'
miRNA:   3'- aCGCCUCgAGCGa-----C-GCGUGCauCaac -5'
31021 5' -56.4 NC_006560.1 + 37240 0.69 0.722493
Target:  5'- cGCGGAgGCugcugcccgUCGCggacucacGCGCACGUGGUccUGg -3'
miRNA:   3'- aCGCCU-CG---------AGCGa-------CGCGUGCAUCA--AC- -5'
31021 5' -56.4 NC_006560.1 + 39613 0.67 0.841947
Target:  5'- cGCGGAGCgcCGCgGCGgGCGUcGg-- -3'
miRNA:   3'- aCGCCUCGa-GCGaCGCgUGCAuCaac -5'
31021 5' -56.4 NC_006560.1 + 43052 0.72 0.529043
Target:  5'- cGCGGAuGUUCaGCUGCGCgcgcACGUGGcUGa -3'
miRNA:   3'- aCGCCU-CGAG-CGACGCG----UGCAUCaAC- -5'
31021 5' -56.4 NC_006560.1 + 52326 0.66 0.87299
Target:  5'- --aGGGGCUCGUcgGCGCGgcCGUGGg-- -3'
miRNA:   3'- acgCCUCGAGCGa-CGCGU--GCAUCaac -5'
31021 5' -56.4 NC_006560.1 + 54945 0.69 0.712493
Target:  5'- cGuCGGGGCUCGC-GCGCcgGCGgcGggGg -3'
miRNA:   3'- aC-GCCUCGAGCGaCGCG--UGCauCaaC- -5'
31021 5' -56.4 NC_006560.1 + 55014 0.71 0.599904
Target:  5'- gGCGGGGCgCGCggaaagGCGCGCGgcGa-- -3'
miRNA:   3'- aCGCCUCGaGCGa-----CGCGUGCauCaac -5'
31021 5' -56.4 NC_006560.1 + 55333 0.67 0.825241
Target:  5'- gGCgGGGGCUCGUgGCGgC-CGUGGUg- -3'
miRNA:   3'- aCG-CCUCGAGCGaCGC-GuGCAUCAac -5'
31021 5' -56.4 NC_006560.1 + 56016 0.7 0.682116
Target:  5'- cGCGuGAGCUCGUgcaccacgagGCGCuGCGUGGg-- -3'
miRNA:   3'- aCGC-CUCGAGCGa---------CGCG-UGCAUCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.