Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31021 | 5' | -56.4 | NC_006560.1 | + | 11741 | 0.68 | 0.78976 |
Target: 5'- cGCGGGGCcCGCaGCGgCGCGUccgGGUc- -3' miRNA: 3'- aCGCCUCGaGCGaCGC-GUGCA---UCAac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 80522 | 0.68 | 0.78976 |
Target: 5'- gUGCGGAGCaccggUCGCaGCGCGC-UGGc-- -3' miRNA: 3'- -ACGCCUCG-----AGCGaCGCGUGcAUCaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 88442 | 0.68 | 0.780508 |
Target: 5'- gGCGGGGgUCGCgcccgcggGCGCGCGg----- -3' miRNA: 3'- aCGCCUCgAGCGa-------CGCGUGCaucaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 116129 | 0.68 | 0.76161 |
Target: 5'- aUG-GGGGCgaaCGCgugGUGCGCGUGGggGg -3' miRNA: 3'- -ACgCCUCGa--GCGa--CGCGUGCAUCaaC- -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 33833 | 0.68 | 0.76161 |
Target: 5'- gGCGGGGgUCgGCcGCGgGCGUGGggGc -3' miRNA: 3'- aCGCCUCgAG-CGaCGCgUGCAUCaaC- -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 134193 | 0.68 | 0.76161 |
Target: 5'- gGCGGAGCU-GCUGCugGCGCGg----- -3' miRNA: 3'- aCGCCUCGAgCGACG--CGUGCaucaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 37240 | 0.69 | 0.722493 |
Target: 5'- cGCGGAgGCugcugcccgUCGCggacucacGCGCACGUGGUccUGg -3' miRNA: 3'- aCGCCU-CG---------AGCGa-------CGCGUGCAUCA--AC- -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 134547 | 0.69 | 0.722493 |
Target: 5'- cGCGGGcguGCUCGCggaGCGCGCGg----- -3' miRNA: 3'- aCGCCU---CGAGCGa--CGCGUGCaucaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 54945 | 0.69 | 0.712493 |
Target: 5'- cGuCGGGGCUCGC-GCGCcgGCGgcGggGg -3' miRNA: 3'- aC-GCCUCGAGCGaCGCG--UGCauCaaC- -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 131874 | 0.7 | 0.692296 |
Target: 5'- cUGCGGGGCgcggUCGCgGCGUACGcGGa-- -3' miRNA: 3'- -ACGCCUCG----AGCGaCGCGUGCaUCaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 56016 | 0.7 | 0.682116 |
Target: 5'- cGCGuGAGCUCGUgcaccacgagGCGCuGCGUGGg-- -3' miRNA: 3'- aCGC-CUCGAGCGa---------CGCG-UGCAUCaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 148274 | 0.7 | 0.671895 |
Target: 5'- cGCGGGGC-CGCgaGCGCGgcCGUAGa-- -3' miRNA: 3'- aCGCCUCGaGCGa-CGCGU--GCAUCaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 126454 | 0.7 | 0.661641 |
Target: 5'- cGCGGuGCcuggCGUcGCGCACGUGGcgGa -3' miRNA: 3'- aCGCCuCGa---GCGaCGCGUGCAUCaaC- -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 55014 | 0.71 | 0.599904 |
Target: 5'- gGCGGGGCgCGCggaaagGCGCGCGgcGa-- -3' miRNA: 3'- aCGCCUCGaGCGa-----CGCGUGCauCaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 128848 | 0.71 | 0.579435 |
Target: 5'- cGCGGAGCUCGC-GCGUcuACGcccGGUUc -3' miRNA: 3'- aCGCCUCGAGCGaCGCG--UGCa--UCAAc -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 33781 | 0.72 | 0.559119 |
Target: 5'- cGCGGGGC-CGUgggGCGCGCGaAGUc- -3' miRNA: 3'- aCGCCUCGaGCGa--CGCGUGCaUCAac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 31834 | 0.72 | 0.539007 |
Target: 5'- gGUGGGGCUCGCcGCGCgACGcgcgGGggGg -3' miRNA: 3'- aCGCCUCGAGCGaCGCG-UGCa---UCaaC- -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 28265 | 0.72 | 0.529043 |
Target: 5'- -cCGGAGCUCGCUGUGCGCc------ -3' miRNA: 3'- acGCCUCGAGCGACGCGUGcaucaac -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 43052 | 0.72 | 0.529043 |
Target: 5'- cGCGGAuGUUCaGCUGCGCgcgcACGUGGcUGa -3' miRNA: 3'- aCGCCU-CGAG-CGACGCG----UGCAUCaAC- -5' |
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31021 | 5' | -56.4 | NC_006560.1 | + | 9099 | 0.73 | 0.480354 |
Target: 5'- gGCGGAGCgcgCGCgcgGCGCGCGg----- -3' miRNA: 3'- aCGCCUCGa--GCGa--CGCGUGCaucaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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