miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 3' -59 NC_006560.1 + 14878 0.66 0.8106
Target:  5'- gGCGgggagagGUCGUUCCCGGgccCGGGuCGGggCCc -3'
miRNA:   3'- -CGCg------CAGCGAGGGCU---GCCC-GUCaaGG- -5'
31022 3' -59 NC_006560.1 + 1614 0.66 0.8106
Target:  5'- gGCGCG-CGCUCU--GCGGGCuucGcgCCu -3'
miRNA:   3'- -CGCGCaGCGAGGgcUGCCCGu--CaaGG- -5'
31022 3' -59 NC_006560.1 + 2122 0.66 0.8106
Target:  5'- cGCgGCGUCGgggUCCGGCucGGGCAGggCg -3'
miRNA:   3'- -CG-CGCAGCga-GGGCUG--CCCGUCaaGg -5'
31022 3' -59 NC_006560.1 + 4440 0.66 0.8106
Target:  5'- gGCGCGggCGCg-CCGGCGGccucGUAGcgCCg -3'
miRNA:   3'- -CGCGCa-GCGagGGCUGCC----CGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 24288 0.66 0.8106
Target:  5'- cGCGCGcUGCggcccgCCCGAgcCGGGC---UCCg -3'
miRNA:   3'- -CGCGCaGCGa-----GGGCU--GCCCGucaAGG- -5'
31022 3' -59 NC_006560.1 + 107825 0.66 0.8106
Target:  5'- cGCG-GUCGaaggCCGACaGGCGGUUCa -3'
miRNA:   3'- -CGCgCAGCgag-GGCUGcCCGUCAAGg -5'
31022 3' -59 NC_006560.1 + 103389 0.66 0.802058
Target:  5'- cGCcCGUUGCUCgCGcuuGCuGGCGGUUUCg -3'
miRNA:   3'- -CGcGCAGCGAGgGC---UGcCCGUCAAGG- -5'
31022 3' -59 NC_006560.1 + 101198 0.66 0.799467
Target:  5'- aGCGCGUCGUgggcggcgaugaccUCgCCGACcgGGGUcguGUUCg -3'
miRNA:   3'- -CGCGCAGCG--------------AG-GGCUG--CCCGu--CAAGg -5'
31022 3' -59 NC_006560.1 + 17628 0.66 0.793371
Target:  5'- uGCGCaUCucggccaacaGCUCCCGgauccggcagagGCGGGCGGccucgUCCc -3'
miRNA:   3'- -CGCGcAG----------CGAGGGC------------UGCCCGUCa----AGG- -5'
31022 3' -59 NC_006560.1 + 21681 0.66 0.793371
Target:  5'- aUGCGa---UCCuCGACGGGCGGcgCCg -3'
miRNA:   3'- cGCGCagcgAGG-GCUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 37764 0.66 0.793371
Target:  5'- cGCGCaucUCGCgcagCaCCGGC-GGCAGggCCa -3'
miRNA:   3'- -CGCGc--AGCGa---G-GGCUGcCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 72682 0.66 0.793371
Target:  5'- cGCcCGUCGaC-CCCGACGccGGCccccgccccGGUUCCg -3'
miRNA:   3'- -CGcGCAGC-GaGGGCUGC--CCG---------UCAAGG- -5'
31022 3' -59 NC_006560.1 + 77416 0.66 0.793371
Target:  5'- gGCGCG-CGCgcgCCCGGCGcuGCcg-UCCg -3'
miRNA:   3'- -CGCGCaGCGa--GGGCUGCc-CGucaAGG- -5'
31022 3' -59 NC_006560.1 + 106990 0.66 0.792495
Target:  5'- cGCGCGuUCGUcCCCGAggccuccCGGGCcugcgAGggCCc -3'
miRNA:   3'- -CGCGC-AGCGaGGGCU-------GCCCG-----UCaaGG- -5'
31022 3' -59 NC_006560.1 + 108744 0.67 0.78455
Target:  5'- -gGCcaggCGCUCCagggaGACGGGCAG--CCg -3'
miRNA:   3'- cgCGca--GCGAGGg----CUGCCCGUCaaGG- -5'
31022 3' -59 NC_006560.1 + 119787 0.67 0.78455
Target:  5'- gGUGCcccCGCccgaccCCCGGCGGGCGcuGUUCUg -3'
miRNA:   3'- -CGCGca-GCGa-----GGGCUGCCCGU--CAAGG- -5'
31022 3' -59 NC_006560.1 + 87891 0.67 0.78455
Target:  5'- gGCGCGcCG-UCCCGGCcgcgccccaGGCGGUaCCa -3'
miRNA:   3'- -CGCGCaGCgAGGGCUGc--------CCGUCAaGG- -5'
31022 3' -59 NC_006560.1 + 106641 0.67 0.78455
Target:  5'- uGCGCG-CGCcCgCCGAgCGGGgGGUcgcgCCg -3'
miRNA:   3'- -CGCGCaGCGaG-GGCU-GCCCgUCAa---GG- -5'
31022 3' -59 NC_006560.1 + 124435 0.67 0.78455
Target:  5'- gGCGgGgauggucgaUCGCggUCUCGGCGGGCAccucUUCCg -3'
miRNA:   3'- -CGCgC---------AGCG--AGGGCUGCCCGUc---AAGG- -5'
31022 3' -59 NC_006560.1 + 82960 0.67 0.78277
Target:  5'- cCGCcucUCGC-CCCGAUGGGCcgccgacuacgcGUUCCu -3'
miRNA:   3'- cGCGc--AGCGaGGGCUGCCCGu-----------CAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.