miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 5' -52.1 NC_006560.1 + 3481 0.71 0.843797
Target:  5'- cGGGcGGCGUCGgcgucGGCGUCGGCGGCguccaGCa -3'
miRNA:   3'- -CUC-CUGCAGU-----UUGUAGUCGUCGa----CGa -5'
31022 5' -52.1 NC_006560.1 + 3887 0.73 0.709464
Target:  5'- cGGcGGCGUCGgcGGCGUCGGCGGCgucgGCg -3'
miRNA:   3'- cUC-CUGCAGU--UUGUAGUCGUCGa---CGa -5'
31022 5' -52.1 NC_006560.1 + 4864 0.69 0.916482
Target:  5'- cGAGGuucGCGUCGAcgGCggCGGCGGCgccgGCg -3'
miRNA:   3'- -CUCC---UGCAGUU--UGuaGUCGUCGa---CGa -5'
31022 5' -52.1 NC_006560.1 + 8805 0.71 0.80573
Target:  5'- aGGGGGCGUCGGaggggagcgaguccGCGUCGGCcGGCcGCg -3'
miRNA:   3'- -CUCCUGCAGUU--------------UGUAGUCG-UCGaCGa -5'
31022 5' -52.1 NC_006560.1 + 9056 0.66 0.975987
Target:  5'- cGGGGGCGUCGAccGCcUCcagggggaggGGCGGCgggGCg -3'
miRNA:   3'- -CUCCUGCAGUU--UGuAG----------UCGUCGa--CGa -5'
31022 5' -52.1 NC_006560.1 + 17229 0.7 0.883159
Target:  5'- cGGGGugGcUCAGGCGgcgCAGCAGCcucGCc -3'
miRNA:   3'- -CUCCugC-AGUUUGUa--GUCGUCGa--CGa -5'
31022 5' -52.1 NC_006560.1 + 18400 0.68 0.922378
Target:  5'- -cGGugGUCAGgacgcGCGcCuGCGGCUGCg -3'
miRNA:   3'- cuCCugCAGUU-----UGUaGuCGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 21300 0.68 0.943355
Target:  5'- cGAGGGCG-CGAGCGggcGCGGCgaUGCUa -3'
miRNA:   3'- -CUCCUGCaGUUUGUaguCGUCG--ACGA- -5'
31022 5' -52.1 NC_006560.1 + 34772 0.68 0.933387
Target:  5'- cGAGGGuCGcccgCAggUGUCGGgGGCUGCg -3'
miRNA:   3'- -CUCCU-GCa---GUuuGUAGUCgUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 39056 0.66 0.978488
Target:  5'- aGGGGugGUgCAucGCcgCGGC-GCUGCg -3'
miRNA:   3'- -CUCCugCA-GUu-UGuaGUCGuCGACGa -5'
31022 5' -52.1 NC_006560.1 + 39959 0.66 0.970359
Target:  5'- cGGGGCGgc-GGCGcgGGCGGCUGCg -3'
miRNA:   3'- cUCCUGCaguUUGUagUCGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 41285 0.66 0.97328
Target:  5'- cAGGaACGUcCGGGCgGUCGcGCGGCUGCc -3'
miRNA:   3'- cUCC-UGCA-GUUUG-UAGU-CGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 42855 0.7 0.860222
Target:  5'- cGGGccagcCGUgGGGCGUCAGCAGCcGCUc -3'
miRNA:   3'- cUCCu----GCAgUUUGUAGUCGUCGaCGA- -5'
31022 5' -52.1 NC_006560.1 + 42912 0.66 0.975987
Target:  5'- cGGGGACGagUCGAcggcGCcgCGGUAGCgcgGCg -3'
miRNA:   3'- -CUCCUGC--AGUU----UGuaGUCGUCGa--CGa -5'
31022 5' -52.1 NC_006560.1 + 43287 0.71 0.808498
Target:  5'- cAGGGCGccggucucgCGGACGUCGGCGGCgaUGCg -3'
miRNA:   3'- cUCCUGCa--------GUUUGUAGUCGUCG--ACGa -5'
31022 5' -52.1 NC_006560.1 + 52281 0.71 0.799214
Target:  5'- --cGGCGUCGAcgcGCAUCuuuGGCGGCUGCc -3'
miRNA:   3'- cucCUGCAGUU---UGUAG---UCGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 52539 0.75 0.592554
Target:  5'- cGGGGGCGUCGAGCggCGGCcuCUGCc -3'
miRNA:   3'- -CUCCUGCAGUUUGuaGUCGucGACGa -5'
31022 5' -52.1 NC_006560.1 + 62753 0.66 0.980568
Target:  5'- gGGGGugGUCcgcggcgAGGCA-CGGCAGCgcccGCUc -3'
miRNA:   3'- -CUCCugCAG-------UUUGUaGUCGUCGa---CGA- -5'
31022 5' -52.1 NC_006560.1 + 62934 0.71 0.808498
Target:  5'- aGGGGCGcgaaccccUCGcuGACGUCGGCgAGCUGCg -3'
miRNA:   3'- cUCCUGC--------AGU--UUGUAGUCG-UCGACGa -5'
31022 5' -52.1 NC_006560.1 + 66958 0.67 0.952297
Target:  5'- uGGGcGCGUCGAGCccCAGCAGCcagaGCg -3'
miRNA:   3'- cUCC-UGCAGUUUGuaGUCGUCGa---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.