miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31022 5' -52.1 NC_006560.1 + 21300 0.68 0.943355
Target:  5'- cGAGGGCG-CGAGCGggcGCGGCgaUGCUa -3'
miRNA:   3'- -CUCCUGCaGUUUGUaguCGUCG--ACGA- -5'
31022 5' -52.1 NC_006560.1 + 95111 0.68 0.933387
Target:  5'- --cGACGUCcgcGAGCGcCGGCGGCUGUa -3'
miRNA:   3'- cucCUGCAG---UUUGUaGUCGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 34772 0.68 0.933387
Target:  5'- cGAGGGuCGcccgCAggUGUCGGgGGCUGCg -3'
miRNA:   3'- -CUCCU-GCa---GUuuGUAGUCgUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 18400 0.68 0.922378
Target:  5'- -cGGugGUCAGgacgcGCGcCuGCGGCUGCg -3'
miRNA:   3'- cuCCugCAGUU-----UGUaGuCGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 4864 0.69 0.916482
Target:  5'- cGAGGuucGCGUCGAcgGCggCGGCGGCgccgGCg -3'
miRNA:   3'- -CUCC---UGCAGUU--UGuaGUCGUCGa---CGa -5'
31022 5' -52.1 NC_006560.1 + 133477 0.69 0.914663
Target:  5'- cGGGGCGUCcGGCGUCuacgggcgagcgcgAGCGGCcGCg -3'
miRNA:   3'- cUCCUGCAGuUUGUAG--------------UCGUCGaCGa -5'
31022 5' -52.1 NC_006560.1 + 17229 0.7 0.883159
Target:  5'- cGGGGugGcUCAGGCGgcgCAGCAGCcucGCc -3'
miRNA:   3'- -CUCCugC-AGUUUGUa--GUCGUCGa--CGa -5'
31022 5' -52.1 NC_006560.1 + 73331 0.7 0.883159
Target:  5'- gGAGGGC-UCGGGCGUCGGCcGCcugGCg -3'
miRNA:   3'- -CUCCUGcAGUUUGUAGUCGuCGa--CGa -5'
31022 5' -52.1 NC_006560.1 + 130249 0.7 0.883159
Target:  5'- cGAGGugG-CGguGGCGUCgAGCgAGCUGCa -3'
miRNA:   3'- -CUCCugCaGU--UUGUAG-UCG-UCGACGa -5'
31022 5' -52.1 NC_006560.1 + 129789 0.7 0.882429
Target:  5'- -uGGACGcgCAccgcaucGACcgCAGCGGCUGCc -3'
miRNA:   3'- cuCCUGCa-GU-------UUGuaGUCGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 111246 0.7 0.867323
Target:  5'- uGGGGGCGuUCGAGCG-CGGCAcggccgaucagauGCUGCa -3'
miRNA:   3'- -CUCCUGC-AGUUUGUaGUCGU-------------CGACGa -5'
31022 5' -52.1 NC_006560.1 + 42855 0.7 0.860222
Target:  5'- cGGGccagcCGUgGGGCGUCAGCAGCcGCUc -3'
miRNA:   3'- cUCCu----GCAgUUUGUAGUCGUCGaCGA- -5'
31022 5' -52.1 NC_006560.1 + 68122 0.7 0.852118
Target:  5'- gGAGGACGcCGuguuGCuGUCGGCcaGGCUGCg -3'
miRNA:   3'- -CUCCUGCaGUu---UG-UAGUCG--UCGACGa -5'
31022 5' -52.1 NC_006560.1 + 3481 0.71 0.843797
Target:  5'- cGGGcGGCGUCGgcgucGGCGUCGGCGGCguccaGCa -3'
miRNA:   3'- -CUC-CUGCAGU-----UUGUAGUCGUCGa----CGa -5'
31022 5' -52.1 NC_006560.1 + 84651 0.71 0.842953
Target:  5'- cGGGGAUGgggUAcuaccucGGCAUCGGgGGCUGCUg -3'
miRNA:   3'- -CUCCUGCa--GU-------UUGUAGUCgUCGACGA- -5'
31022 5' -52.1 NC_006560.1 + 62934 0.71 0.808498
Target:  5'- aGGGGCGcgaaccccUCGcuGACGUCGGCgAGCUGCg -3'
miRNA:   3'- cUCCUGC--------AGU--UUGUAGUCG-UCGACGa -5'
31022 5' -52.1 NC_006560.1 + 43287 0.71 0.808498
Target:  5'- cAGGGCGccggucucgCGGACGUCGGCGGCgaUGCg -3'
miRNA:   3'- cUCCUGCa--------GUUUGUAGUCGUCG--ACGa -5'
31022 5' -52.1 NC_006560.1 + 8805 0.71 0.80573
Target:  5'- aGGGGGCGUCGGaggggagcgaguccGCGUCGGCcGGCcGCg -3'
miRNA:   3'- -CUCCUGCAGUU--------------UGUAGUCG-UCGaCGa -5'
31022 5' -52.1 NC_006560.1 + 52281 0.71 0.799214
Target:  5'- --cGGCGUCGAcgcGCAUCuuuGGCGGCUGCc -3'
miRNA:   3'- cucCUGCAGUU---UGUAG---UCGUCGACGa -5'
31022 5' -52.1 NC_006560.1 + 82760 0.72 0.789765
Target:  5'- cGAGGACGUCGAG-GUCGGgGGCccgGCg -3'
miRNA:   3'- -CUCCUGCAGUUUgUAGUCgUCGa--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.