miRNA display CGI


Results 21 - 40 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31023 3' -62 NC_006560.1 + 146080 0.66 0.682243
Target:  5'- --gGCGGGagCGgCGgGCCCACUgcggcuccgcgucGGCCa -3'
miRNA:   3'- gcaCGCCCa-GCaGCgCGGGUGG-------------UCGG- -5'
31023 3' -62 NC_006560.1 + 34666 0.66 0.67742
Target:  5'- cCGgGCGGGUCG-CGgGgaggaaccuaccuguCCCGCCGGgCg -3'
miRNA:   3'- -GCaCGCCCAGCaGCgC---------------GGGUGGUCgG- -5'
31023 3' -62 NC_006560.1 + 16393 0.66 0.67742
Target:  5'- gCGgGCGGG-CGUCgccuggagccgcgguGcCGCCCGCCcgcGCCg -3'
miRNA:   3'- -GCaCGCCCaGCAG---------------C-GCGGGUGGu--CGG- -5'
31023 3' -62 NC_006560.1 + 117319 0.66 0.673555
Target:  5'- --cGCGGaGggugagCgGUCGgGCCCGCCGcGCCc -3'
miRNA:   3'- gcaCGCC-Ca-----G-CAGCgCGGGUGGU-CGG- -5'
31023 3' -62 NC_006560.1 + 4672 0.66 0.673555
Target:  5'- --aGCGGcccguggCGUCGCGCCCgGCCAcgGCg -3'
miRNA:   3'- gcaCGCCca-----GCAGCGCGGG-UGGU--CGg -5'
31023 3' -62 NC_006560.1 + 84161 0.66 0.673555
Target:  5'- uCGggggGCGGGUCugcacCGCGCUC-CgGGCCc -3'
miRNA:   3'- -GCa---CGCCCAGca---GCGCGGGuGgUCGG- -5'
31023 3' -62 NC_006560.1 + 102809 0.66 0.673555
Target:  5'- gGUGCGcGUCGagUCGCGC--GCCGGCg -3'
miRNA:   3'- gCACGCcCAGC--AGCGCGggUGGUCGg -5'
31023 3' -62 NC_006560.1 + 135218 0.66 0.673555
Target:  5'- --gGCGGGUCG-CG-GCCuCGCUGGaCCg -3'
miRNA:   3'- gcaCGCCCAGCaGCgCGG-GUGGUC-GG- -5'
31023 3' -62 NC_006560.1 + 69684 0.66 0.673555
Target:  5'- ----gGGGUCGgCGCugcuGCCCGCCGGgCa -3'
miRNA:   3'- gcacgCCCAGCaGCG----CGGGUGGUCgG- -5'
31023 3' -62 NC_006560.1 + 80159 0.66 0.673555
Target:  5'- cCGggGCGGGUCGagGU-CCC-CCGGCg -3'
miRNA:   3'- -GCa-CGCCCAGCagCGcGGGuGGUCGg -5'
31023 3' -62 NC_006560.1 + 130591 0.66 0.673555
Target:  5'- --gGCGGcgcaCGUCGcCGCgCgGCCGGCCg -3'
miRNA:   3'- gcaCGCCca--GCAGC-GCG-GgUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 84977 0.66 0.673555
Target:  5'- ---cCGGGaCGUCG-GCCCACCuGCa -3'
miRNA:   3'- gcacGCCCaGCAGCgCGGGUGGuCGg -5'
31023 3' -62 NC_006560.1 + 89522 0.66 0.669685
Target:  5'- --cGCGGGagcagCGaccccggcacccgCGCGCCCGgCCGGCUg -3'
miRNA:   3'- gcaCGCCCa----GCa------------GCGCGGGU-GGUCGG- -5'
31023 3' -62 NC_006560.1 + 138270 0.66 0.667749
Target:  5'- gGUGauGGUCGacugucggacggaguUCuGCGCCUACCGGUUc -3'
miRNA:   3'- gCACgcCCAGC---------------AG-CGCGGGUGGUCGG- -5'
31023 3' -62 NC_006560.1 + 31852 0.66 0.663873
Target:  5'- aCGcGCGGGggggcCGagggggGCGCCC-CCGGCCc -3'
miRNA:   3'- -GCaCGCCCa----GCag----CGCGGGuGGUCGG- -5'
31023 3' -62 NC_006560.1 + 50416 0.66 0.663873
Target:  5'- gCG-GCGGGggCGgagugccccCGgGCCCGCCccccGGCCa -3'
miRNA:   3'- -GCaCGCCCa-GCa--------GCgCGGGUGG----UCGG- -5'
31023 3' -62 NC_006560.1 + 81527 0.66 0.663873
Target:  5'- gGUGCGGuGgCGgCGCGCCagggcguGCuCGGCCg -3'
miRNA:   3'- gCACGCC-CaGCaGCGCGGg------UG-GUCGG- -5'
31023 3' -62 NC_006560.1 + 125166 0.66 0.663873
Target:  5'- gGUGUGGG-CGgaCGCGCggGCCGGCg -3'
miRNA:   3'- gCACGCCCaGCa-GCGCGggUGGUCGg -5'
31023 3' -62 NC_006560.1 + 56870 0.66 0.663873
Target:  5'- aCG-GCGGcg-GUCGCGuaCCCGCCGcGCCg -3'
miRNA:   3'- -GCaCGCCcagCAGCGC--GGGUGGU-CGG- -5'
31023 3' -62 NC_006560.1 + 14205 0.66 0.662903
Target:  5'- gCGUG-GGGUgGUCgggcgggGCGCCCG-CGGUCg -3'
miRNA:   3'- -GCACgCCCAgCAG-------CGCGGGUgGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.