Results 21 - 40 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 92955 | 0.67 | 0.808934 |
Target: 5'- cGAGGCCcucgucacccaGACGGGCGGcgCggACGUCg-- -3' miRNA: 3'- -UUCCGG-----------CUGUCCGCCaaG--UGCAGaag -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 83955 | 0.67 | 0.808934 |
Target: 5'- gGAGGCgcagcccgacgaCGGCGGGCGGUUCGCc----- -3' miRNA: 3'- -UUCCG------------GCUGUCCGCCAAGUGcagaag -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 132917 | 0.67 | 0.808934 |
Target: 5'- -cGGCCGAC-GGCGGccagcCACGccgagaUCUUCa -3' miRNA: 3'- uuCCGGCUGuCCGCCaa---GUGC------AGAAG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 132952 | 0.67 | 0.808934 |
Target: 5'- gAAGGCCGA--GGCGG-UCGCGUg--- -3' miRNA: 3'- -UUCCGGCUguCCGCCaAGUGCAgaag -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 101741 | 0.68 | 0.799966 |
Target: 5'- -cGGCCG-CcGG-GGUUCACGUCggCg -3' miRNA: 3'- uuCCGGCuGuCCgCCAAGUGCAGaaG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 95063 | 0.68 | 0.799966 |
Target: 5'- cGAGGCCGGCccggagagcuGGGCGGacgUCGCGg---- -3' miRNA: 3'- -UUCCGGCUG----------UCCGCCa--AGUGCagaag -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 76495 | 0.68 | 0.798154 |
Target: 5'- -cGGUCGACuGGCuGGagcacgcgcggCGCGUCUUCg -3' miRNA: 3'- uuCCGGCUGuCCG-CCaa---------GUGCAGAAG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 59471 | 0.68 | 0.790843 |
Target: 5'- -cGGCCGaacGCGGGCGGgaggUCGCGg---- -3' miRNA: 3'- uuCCGGC---UGUCCGCCa---AGUGCagaag -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 26093 | 0.69 | 0.752986 |
Target: 5'- -cGGcCCGGCGcGGCGGgggcUUCGCGggggCUUCg -3' miRNA: 3'- uuCC-GGCUGU-CCGCC----AAGUGCa---GAAG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 108518 | 0.69 | 0.713391 |
Target: 5'- -cGGCCGGC-GGCGGgcccgggggCGCGUCg-- -3' miRNA: 3'- uuCCGGCUGuCCGCCaa-------GUGCAGaag -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 4852 | 0.69 | 0.703292 |
Target: 5'- cGGcGCCGGCGGcGaGGUUCGCGUCg-- -3' miRNA: 3'- uUC-CGGCUGUC-CgCCAAGUGCAGaag -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 142076 | 0.69 | 0.703292 |
Target: 5'- cGAGGCCgGGCGGGCGGggcCGCGgcgCg-- -3' miRNA: 3'- -UUCCGG-CUGUCCGCCaa-GUGCa--Gaag -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 51729 | 0.7 | 0.693132 |
Target: 5'- uGGGCCGACgcgcGGGCGGccUCGCGgcgCaUCg -3' miRNA: 3'- uUCCGGCUG----UCCGCCa-AGUGCa--GaAG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 93996 | 0.7 | 0.682919 |
Target: 5'- gGGGGCCG--GGGCGGgggacgUCGCGgccuUCUUCg -3' miRNA: 3'- -UUCCGGCugUCCGCCa-----AGUGC----AGAAG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 58295 | 0.7 | 0.682919 |
Target: 5'- cGGGGCCuucuuGCGGGCGGg-CGCGUCggUCg -3' miRNA: 3'- -UUCCGGc----UGUCCGCCaaGUGCAGa-AG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 14020 | 0.7 | 0.672664 |
Target: 5'- gAGGGcCCGGCGGaCGGggUCGCGUCggggUCa -3' miRNA: 3'- -UUCC-GGCUGUCcGCCa-AGUGCAGa---AG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 30032 | 0.7 | 0.652062 |
Target: 5'- cGAGGCCGAgGaGGCGGUgCGCGcCggCa -3' miRNA: 3'- -UUCCGGCUgU-CCGCCAaGUGCaGaaG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 3377 | 0.7 | 0.65103 |
Target: 5'- cGGGCgGGCGGGCGGg-CGCGggccggcUCUUCu -3' miRNA: 3'- uUCCGgCUGUCCGCCaaGUGC-------AGAAG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 3323 | 0.71 | 0.621058 |
Target: 5'- cGGGCCGggggcGCGGGCGGgcgGCGUCggcgUCg -3' miRNA: 3'- uUCCGGC-----UGUCCGCCaagUGCAGa---AG- -5' |
|||||||
31023 | 5' | -56.2 | NC_006560.1 | + | 53057 | 0.71 | 0.621058 |
Target: 5'- -uGGCCcuGCGGGCGGccgUCugcgACGUCUUCg -3' miRNA: 3'- uuCCGGc-UGUCCGCCa--AG----UGCAGAAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home