miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31024 3' -56 NC_006560.1 + 117964 0.66 0.890294
Target:  5'- -uUCUGCCgguacguguggcgCCUgGGCGcggCGGCGCCCg -3'
miRNA:   3'- cuAGGUGGa------------GGA-CCGCaa-GCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 90507 0.66 0.890294
Target:  5'- ---gCGCCgCCUGGCGUcggucauggccggCGACGCCg -3'
miRNA:   3'- cuagGUGGaGGACCGCAa------------GCUGUGGg -5'
31024 3' -56 NC_006560.1 + 146567 0.67 0.88623
Target:  5'- gGGUCC-CCgcgagCCggaGGCGccccCGGCGCCCg -3'
miRNA:   3'- -CUAGGuGGa----GGa--CCGCaa--GCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 75897 0.67 0.88623
Target:  5'- -cUCCGCCgauaCgUGGCGUUCuuccggcgggGGCACgCCg -3'
miRNA:   3'- cuAGGUGGa---GgACCGCAAG----------CUGUG-GG- -5'
31024 3' -56 NC_006560.1 + 35272 0.67 0.88623
Target:  5'- --gCCGCCgcgCCgGGCGg-CGGgGCCCg -3'
miRNA:   3'- cuaGGUGGa--GGaCCGCaaGCUgUGGG- -5'
31024 3' -56 NC_006560.1 + 74330 0.67 0.884857
Target:  5'- --gCCGCCggcggCCUGGCucccgagacgCGGCGCCUg -3'
miRNA:   3'- cuaGGUGGa----GGACCGcaa-------GCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 137147 0.67 0.879277
Target:  5'- --aCCACCgagcUCCUGGCGcUCGGgGCg- -3'
miRNA:   3'- cuaGGUGG----AGGACCGCaAGCUgUGgg -5'
31024 3' -56 NC_006560.1 + 18856 0.67 0.879277
Target:  5'- cGUCuCGCCUCUgGGCGgggcCGcCGCCCc -3'
miRNA:   3'- cUAG-GUGGAGGaCCGCaa--GCuGUGGG- -5'
31024 3' -56 NC_006560.1 + 46846 0.67 0.879277
Target:  5'- --cCCGCCUCCc-GCGUcucucUCGACcucgaGCCCg -3'
miRNA:   3'- cuaGGUGGAGGacCGCA-----AGCUG-----UGGG- -5'
31024 3' -56 NC_006560.1 + 72312 0.67 0.879277
Target:  5'- -cUCCGCC-CC-GGCGgaucCGGgGCCCg -3'
miRNA:   3'- cuAGGUGGaGGaCCGCaa--GCUgUGGG- -5'
31024 3' -56 NC_006560.1 + 449 0.67 0.872108
Target:  5'- -cUCCgcgGCCUCCccGGCGggCGGCcagucACCCc -3'
miRNA:   3'- cuAGG---UGGAGGa-CCGCaaGCUG-----UGGG- -5'
31024 3' -56 NC_006560.1 + 75391 0.67 0.872108
Target:  5'- --gCCGCCgaCCUGGCGgagaagcUCGcggcccggcGCGCCCg -3'
miRNA:   3'- cuaGGUGGa-GGACCGCa------AGC---------UGUGGG- -5'
31024 3' -56 NC_006560.1 + 69006 0.67 0.872108
Target:  5'- cGUCCGCa-CCgacgcggcGGUGUUCGAC-CCCg -3'
miRNA:   3'- cUAGGUGgaGGa-------CCGCAAGCUGuGGG- -5'
31024 3' -56 NC_006560.1 + 57134 0.67 0.864725
Target:  5'- --aCCACgaCCgcggGGCG-UCGGCGCCg -3'
miRNA:   3'- cuaGGUGgaGGa---CCGCaAGCUGUGGg -5'
31024 3' -56 NC_006560.1 + 93001 0.67 0.864725
Target:  5'- -uUCgACUUCggGGCGUUCGGgGCCg -3'
miRNA:   3'- cuAGgUGGAGgaCCGCAAGCUgUGGg -5'
31024 3' -56 NC_006560.1 + 145175 0.67 0.857135
Target:  5'- --cCCGCCUcCCUGGgG---GGCGCCCu -3'
miRNA:   3'- cuaGGUGGA-GGACCgCaagCUGUGGG- -5'
31024 3' -56 NC_006560.1 + 52406 0.67 0.857135
Target:  5'- cGcgCCGCgCagCUGGCGgcgCGGCGCCa -3'
miRNA:   3'- -CuaGGUG-GagGACCGCaa-GCUGUGGg -5'
31024 3' -56 NC_006560.1 + 92330 0.67 0.856365
Target:  5'- gGGUCCcgccggcccaccaGCCUCCaGGCGgcCGcCGCCUg -3'
miRNA:   3'- -CUAGG-------------UGGAGGaCCGCaaGCuGUGGG- -5'
31024 3' -56 NC_006560.1 + 106725 0.68 0.841359
Target:  5'- uGUgCACCUCCgacgUGGCGgUgGcCACCCa -3'
miRNA:   3'- cUAgGUGGAGG----ACCGCaAgCuGUGGG- -5'
31024 3' -56 NC_006560.1 + 73690 0.68 0.841359
Target:  5'- --gCgGCCcCCUGGCGguggCGGCcCCCg -3'
miRNA:   3'- cuaGgUGGaGGACCGCaa--GCUGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.