miRNA display CGI


Results 21 - 40 of 376 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31024 5' -65.1 NC_006560.1 + 150441 0.66 0.557732
Target:  5'- cGCGGCCG-CGGCCgGcgcggguuugggcGGGGCcgGCccCGCc -3'
miRNA:   3'- -CGCUGGCaGCCGGgC-------------CCCCG--CGa-GCG- -5'
31024 5' -65.1 NC_006560.1 + 67858 0.66 0.553081
Target:  5'- -gGGCCGcgCGccgcccccagaggacGUCCGGGuGGCGC-CGCg -3'
miRNA:   3'- cgCUGGCa-GC---------------CGGGCCC-CCGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 101482 0.66 0.549368
Target:  5'- gGCGucGCgGUCGGcCCCGGaGGccccccGCGCgaUCGCc -3'
miRNA:   3'- -CGC--UGgCAGCC-GGGCC-CC------CGCG--AGCG- -5'
31024 5' -65.1 NC_006560.1 + 6322 0.66 0.549368
Target:  5'- gGCGACCGgggacGCCgCGcGGGCGCccCGCc -3'
miRNA:   3'- -CGCUGGCagc--CGG-GCcCCCGCGa-GCG- -5'
31024 5' -65.1 NC_006560.1 + 30587 0.66 0.549368
Target:  5'- cGCG-CCG-CGGCCCGcGucGCGCgccCGCc -3'
miRNA:   3'- -CGCuGGCaGCCGGGC-CccCGCGa--GCG- -5'
31024 5' -65.1 NC_006560.1 + 37522 0.66 0.549368
Target:  5'- gGCGcGCCG-CGGCUCGGccGCGCggGCg -3'
miRNA:   3'- -CGC-UGGCaGCCGGGCCccCGCGagCG- -5'
31024 5' -65.1 NC_006560.1 + 83356 0.66 0.549368
Target:  5'- cGCGGgCGgCGGCCCGGGGccccaGCcCUCc- -3'
miRNA:   3'- -CGCUgGCaGCCGGGCCCC-----CGcGAGcg -5'
31024 5' -65.1 NC_006560.1 + 119730 0.66 0.549368
Target:  5'- aGCGGaucaagaucuUCGUcugcgugaCGGCCugaCGGGGGCGCUgUGCc -3'
miRNA:   3'- -CGCU----------GGCA--------GCCGG---GCCCCCGCGA-GCG- -5'
31024 5' -65.1 NC_006560.1 + 125127 0.66 0.549368
Target:  5'- gGUG-CC--CGGcCCCGaGGaGGCGCUCGUg -3'
miRNA:   3'- -CGCuGGcaGCC-GGGC-CC-CCGCGAGCG- -5'
31024 5' -65.1 NC_006560.1 + 147144 0.66 0.549368
Target:  5'- cGCGcGCCG-CGGCgCCGccucGGGGCGcCUCc- -3'
miRNA:   3'- -CGC-UGGCaGCCG-GGC----CCCCGC-GAGcg -5'
31024 5' -65.1 NC_006560.1 + 1516 0.66 0.549368
Target:  5'- cGCGugCaUCGGgCCccGGGCGCgCGCc -3'
miRNA:   3'- -CGCugGcAGCCgGGccCCCGCGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 58911 0.66 0.549368
Target:  5'- cGCGGagcuCCGUCGcGCCCGacgccgacucGGGGUcCUCGa -3'
miRNA:   3'- -CGCU----GGCAGC-CGGGC----------CCCCGcGAGCg -5'
31024 5' -65.1 NC_006560.1 + 119608 0.66 0.549368
Target:  5'- gGCGGggcCCGagGGCCCcgacggcggcGGGGccgcGCGCaUCGCg -3'
miRNA:   3'- -CGCU---GGCagCCGGG----------CCCC----CGCG-AGCG- -5'
31024 5' -65.1 NC_006560.1 + 101402 0.66 0.548441
Target:  5'- uCGACCGucgcgUCGGCCCGGuagagcGGGCcgacguaGUUgGCg -3'
miRNA:   3'- cGCUGGC-----AGCCGGGCC------CCCG-------CGAgCG- -5'
31024 5' -65.1 NC_006560.1 + 22735 0.66 0.546589
Target:  5'- cGCGGCCG-CGGCCCGugccccuggacgccGacgaggccucGGGCGCcuucuacgCGCg -3'
miRNA:   3'- -CGCUGGCaGCCGGGC--------------C----------CCCGCGa-------GCG- -5'
31024 5' -65.1 NC_006560.1 + 95042 0.66 0.546589
Target:  5'- cGCGGCCGgggagCcggcccgcgaggccGGCCCGGagagcuGGGCGgaCGUc -3'
miRNA:   3'- -CGCUGGCa----G--------------CCGGGCC------CCCGCgaGCG- -5'
31024 5' -65.1 NC_006560.1 + 144828 0.66 0.543814
Target:  5'- cGCGGCC-UCcccgGGCCCugcccccucugcccgGGGGGCuGCcCGCc -3'
miRNA:   3'- -CGCUGGcAG----CCGGG---------------CCCCCG-CGaGCG- -5'
31024 5' -65.1 NC_006560.1 + 110279 0.66 0.540122
Target:  5'- gGCG-CUGUCccucuGGUaCGGGGGCGCggcccucgUCGCc -3'
miRNA:   3'- -CGCuGGCAG-----CCGgGCCCCCGCG--------AGCG- -5'
31024 5' -65.1 NC_006560.1 + 46464 0.66 0.540122
Target:  5'- --uACUGggUGGUCCGGGGGCuaUUCGCg -3'
miRNA:   3'- cgcUGGCa-GCCGGGCCCCCGc-GAGCG- -5'
31024 5' -65.1 NC_006560.1 + 9355 0.66 0.540122
Target:  5'- -aGGCCGgucCGuGCCCGGcaGGCGgUCGUc -3'
miRNA:   3'- cgCUGGCa--GC-CGGGCCc-CCGCgAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.