miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31025 3' -52.3 NC_006560.1 + 89309 0.67 0.976216
Target:  5'- cGUUcCcGGCGggACCUCagacgGCCGGGGCg -3'
miRNA:   3'- aCAAaGaCUGCa-UGGAG-----UGGCUCCGg -5'
31025 3' -52.3 NC_006560.1 + 146996 0.67 0.976216
Target:  5'- -----aUGGCGgcucgcgGCCgcggggcCACCGGGGCCa -3'
miRNA:   3'- acaaagACUGCa------UGGa------GUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 72107 0.67 0.973594
Target:  5'- ------cGGCcgGCCUCGCCGcGGCCg -3'
miRNA:   3'- acaaagaCUGcaUGGAGUGGCuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 48704 0.67 0.973594
Target:  5'- aUGUUUCUGcaccUGUACCUCuuccucgcCCGggagguucucuGGGCCg -3'
miRNA:   3'- -ACAAAGACu---GCAUGGAGu-------GGC-----------UCCGG- -5'
31025 3' -52.3 NC_006560.1 + 119498 0.67 0.967733
Target:  5'- --aUUCUgccggGAgGUGCCUCcggGCCGcgGGGCCg -3'
miRNA:   3'- acaAAGA-----CUgCAUGGAG---UGGC--UCCGG- -5'
31025 3' -52.3 NC_006560.1 + 120318 0.67 0.967733
Target:  5'- ----cCUGugGgacucgGCCgccgUCGCCGAGGCg -3'
miRNA:   3'- acaaaGACugCa-----UGG----AGUGGCUCCGg -5'
31025 3' -52.3 NC_006560.1 + 74967 0.68 0.961006
Target:  5'- ------cGACGU-UCUCGCCGcGGCCg -3'
miRNA:   3'- acaaagaCUGCAuGGAGUGGCuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 39406 0.68 0.957302
Target:  5'- gGgcUCgGGgGcGCCgcggCGCCGGGGCCg -3'
miRNA:   3'- aCaaAGaCUgCaUGGa---GUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 90276 0.68 0.957302
Target:  5'- ----cCUGGCccGCCUCcucuUCGAGGCCg -3'
miRNA:   3'- acaaaGACUGcaUGGAGu---GGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 134378 0.68 0.957302
Target:  5'- aUGUUgaUGAUGaGCCUCA-CGAGGCg -3'
miRNA:   3'- -ACAAagACUGCaUGGAGUgGCUCCGg -5'
31025 3' -52.3 NC_006560.1 + 55058 0.68 0.953365
Target:  5'- ---gUCUGG---GCgUCGCCGGGGCCc -3'
miRNA:   3'- acaaAGACUgcaUGgAGUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 133329 0.68 0.953365
Target:  5'- gGUggCUGAUG-GCCUCGgCGAcGCCg -3'
miRNA:   3'- aCAaaGACUGCaUGGAGUgGCUcCGG- -5'
31025 3' -52.3 NC_006560.1 + 5338 0.68 0.944774
Target:  5'- cGggUCcGGCGU-CCUCGgCG-GGCCg -3'
miRNA:   3'- aCaaAGaCUGCAuGGAGUgGCuCCGG- -5'
31025 3' -52.3 NC_006560.1 + 36101 0.68 0.944774
Target:  5'- ------cGGCGggGCCgcggcgggCACCGGGGCCg -3'
miRNA:   3'- acaaagaCUGCa-UGGa-------GUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 50827 0.69 0.940114
Target:  5'- cUGUgc--GGCGagcGCCUgcaCGCCGAGGCCg -3'
miRNA:   3'- -ACAaagaCUGCa--UGGA---GUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 99135 0.69 0.940114
Target:  5'- gGUgcgUCUcGGgGUcgccgGCCUCGCCGGGGgCg -3'
miRNA:   3'- aCAa--AGA-CUgCA-----UGGAGUGGCUCCgG- -5'
31025 3' -52.3 NC_006560.1 + 69318 0.69 0.930055
Target:  5'- --cUUCggguGCGUGgcCCUgACCGGGGCCa -3'
miRNA:   3'- acaAAGac--UGCAU--GGAgUGGCUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 62951 0.69 0.930055
Target:  5'- ----gCUGACGUcggcgaGCUgCGCCGAGGCg -3'
miRNA:   3'- acaaaGACUGCA------UGGaGUGGCUCCGg -5'
31025 3' -52.3 NC_006560.1 + 13253 0.69 0.930055
Target:  5'- gGUUgcgGACGggGCaCUCGCCcaGGGGCCg -3'
miRNA:   3'- aCAAagaCUGCa-UG-GAGUGG--CUCCGG- -5'
31025 3' -52.3 NC_006560.1 + 126006 0.69 0.930055
Target:  5'- gUGUgUCUGuCGUGCgcgggggggaaaCUCACaCGAGGCg -3'
miRNA:   3'- -ACAaAGACuGCAUG------------GAGUG-GCUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.